Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05044 ATGGCATCAGGTTGGGGAATTACAGGCAACAAAGGTCGTTGCTACGATTTCTGGATGGACTTCAGCGAATGCATGTCTCGCTGCAGAGAACCTAAGGACTGTGCCCTTCTCCGTGAAGACTACCTCGAATGCCTACACCATTCCAAAGAGTTCCAACGAAGAAACCGGATTTACAAGGAGGAGCAGCGCAAACTAAGAGCTGCTTCCAGGAAAGATAAGGACGATGAAGAAAGAAAGAAAATGAGTAGACGTGCGAGCAGAACTGTTTATGTTGGAAATCTACCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTCAGAAGTATGGACACATAACTCATATTGACCTAAAGGTTCCGCCAAGGCCACCTGGCTATGCATTCGTAGAGTTTGAAGATGCTCAAGATGCCGAGGATGCAATTCGTGGTCGTGATGGTTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCACATGGCGGGCGTGGCCATTCATCGTCGAAAGATCGATATAGTAGTCACAGCAATGGTCGGGGTGGACGTGGAGTATCCAGGCGCTCTGAATATCGTGTACTAGTCACTGGATTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTTTGCTTTTCTCAAGTTTTTCATGATGGAAGGGGTACTACAGGGATTGTGGACTACACCAACTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGAAATGCATTTTCCAGGGCTTATGTTCGTGTGAGGGAATATGATTCGAGGAGGGACTCCTCTAGAAGTCCCAGTCGTGGCCCATCGCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGCAGTCGTAGCCGTAGTTACAGTCGGGGCCGTAGCCAAAGCAAATCTCCAAAGGGTAAATCTTCACAACGGTCACCAGCTAAATCTCCATCAAGATCTCCTTCTCGATCTCGCTCAAGATCAAGGTCCCGCTCATTATCAGGGTATGAAATGTTTTTAAATGTGTACAAATTTTTGTATTTTTGTCTATTACTATTTGAATGA 1080 0.463 MASGWGITGNKGRCYDFWMDFSECMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKEEQRKLRAASRKDKDDEERKKMSRRASRTVYVGNLPGDIREREVEDLFQKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSKDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRGRSQSKSPKGKSSQRSPAKSPSRSPSRSRSRSRSRSLSGYEMFLNVYKFLYFCLLLFE. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05044 359 MobiDBLite consensus disorder prediction 301 336 - -
Seca2g05044 359 SUPERFAMILY RNA-binding domain, RBD 86 257 IPR035979 GO:0003676
Seca2g05044 359 CDD RRM2_SF2_plant_like 191 266 - -
Seca2g05044 359 MobiDBLite consensus disorder prediction 62 84 - -
Seca2g05044 359 CDD RRM1_SF2_plant_like 88 158 - -
Seca2g05044 359 MobiDBLite consensus disorder prediction 286 300 - -
Seca2g05044 359 MobiDBLite consensus disorder prediction 267 336 - -
Seca2g05044 359 Gene3D - 53 190 IPR012677 -
Seca2g05044 359 Gene3D - 191 268 IPR012677 -
Seca2g05044 359 Pfam NADH:ubiquinone oxidoreductase, NDUFS5-15kDa 12 64 IPR019342 -
Seca2g05044 359 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 81 190 - -
Seca2g05044 359 FunFam serine/arginine-rich splicing factor SR34A-like 191 268 - -
Seca2g05044 359 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 60 336 - -
Seca2g05044 359 MobiDBLite consensus disorder prediction 150 187 - -
Seca2g05044 359 MobiDBLite consensus disorder prediction 150 188 - -
Seca2g05044 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Seca2g05044 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 162 IPR000504 GO:0003723
Seca2g05044 359 SMART rrm1_1 88 158 IPR000504 GO:0003723
Seca2g05044 359 SMART rrm1_1 192 263 IPR000504 GO:0003723
Seca2g05044 359 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 11 52 - -
Seca2g05044 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 255 IPR000504 GO:0003723
Seca2g05044 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05044 Seca-Chr2 137008371 137017428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05044 83 253 Eukaryotic Initiation Factors Gene Family AT4G34110 23.034 1.34e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05044 K12890 - gmx:100789847 347.436