Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05041 ATGAAGTTCTGCAAAAAATACCAGGAGTACATGCAAGGCCAGGAGAAGAAGCTTCCTGGGGTTGGTTTCAAGAAGCTTAAGAAGATTTTGAAAAAGTGCAGAAAAGATTATCAATCCCAGAAAGCCCTTCATGCATCCCATGGCCATGGCGTCAGAACCTGCCCTGACCATTGCCCAGAACTTTTATATAATTGTTCAGTGTGCGATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGCCATAGTTGGCTGCTTTAATCAGCGTGCTCAGAAATTGCTGGAGCTACACCTCGCTTCTGGCTTCAGAAAGTACCTTTTCTGGTTCAAAGGGAAATTACAAGGGAGCCATAGTGCTCTAGTTCAAGAAGGCAAAGATCTGGTTACTTATGCACTCATAAATGCCATTGCTATTCGAAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCACAAGTCCAGAGTATGCACAAGGAAATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACCAAGGTCAAGTCAAGGAAGGCACCTGCTTTGTTCGATGGATGTTCCCTCACATTTAAGGATGGAAAACCATCTCTTACTTGTGAGCTCTTTGATTCTATCAAAATTGATATTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCACTGACTTGTGGCCATATATTCTGCTATACTTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTGATGGACTTAAGGCAGCAAATCCTAAAGAGAAATGTCCTTTATGCAGAGAGGGTGCAGTTTATGAAGGTGCTGTGCACTTGGAAGAACTAAACATTCTGTTAGGCCGAAGCTGTCAGGAATACTGGGAGCAAAGGCTTCAAACAGAGAGGGCAGAGAGGGTTAAGCAAATAAAGGAACACTGGGAATCACAGAGTAGGGCATTCTTGGGTATTTAA 1002 0.4222 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRKDYQSQKALHASHGHGVRTCPDHCPELLYNCSVCDGTFFPSLLNEMSAIVGCFNQRAQKLLELHLASGFRKYLFWFKGKLQGSHSALVQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKAPALFDGCSLTFKDGKPSLTCELFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYTCACSAASVSIVDGLKAANPKEKCPLCREGAVYEGAVHLEELNILLGRSCQEYWEQRLQTERAERVKQIKEHWESQSRAFLGI. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05041 333 CDD RING-HC_BAH1-like 219 292 - -
Seca2g05041 333 ProSiteProfiles SPX domain profile. 1 160 IPR004331 -
Seca2g05041 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 332 IPR033326 -
Seca2g05041 333 CDD SPX_BAH1-like 2 156 - -
Seca2g05041 333 SUPERFAMILY RING/U-box 222 281 - -
Seca2g05041 333 ProSiteProfiles Zinc finger RING-type profile. 229 278 IPR001841 -
Seca2g05041 333 Pfam Zinc finger, C3HC4 type (RING finger) 226 279 - -
Seca2g05041 333 ProSitePatterns Zinc finger RING-type signature. 244 253 IPR017907 -
Seca2g05041 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 330 IPR013083 -
Seca2g05041 333 SMART ring_2 229 277 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05041 Seca-Chr2 136983696 136987165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05041 226 278 C3H Transcription Factor Family AT4G28270 41.379 3.96e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05041 K16275 - gmx:100787904 596.275