Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05039 ATGTCCCCTGCATATGCAACTCTGATCACTTCTCTCTCTTGTTCATCCCCAATGAAACAAACCTCAGAGGATACGTTAATCTCAACTATACTTCAATGGTTGAGATTCATTTTCTTCTCTCCTTGTCCTCAGAGAGCTCTTTTGTCTGCGGTTGATGTCCTACTCCTTCTCATCCTCTTCATCTTTGCTGTCATCAAGCTCTATAAAAGGTTCACCTCCAATGGCGATTCCCCCAATGAACTCAACAAGACCCTCATAAGCAAAAACAGATACTCTACCATAACAACTACATGGTTTAAGCTAACTCTAACTGTAACTATTGTTTTGGCCATATTGGACACGGTTGCTTGCGTTCTTGTATTCAGCAGTTCAGCCAAGCTTCAATGGAAGCAAGTTGATGGGGTGTTTTGGTTAGTCCAGGCCATAACTCATGCAGTACTTGCAATCTCAATCATCCATGAGAAAAGATTTGAAGCTGTTACACACCCAATGTTGCTTAGAGTTTATTGGGTTGTGAATTTCATTATCATTTCCCTGTTCACAGCATCTGGGGTTGTACGTTTTGTTTCTGTGGATGTGGATGAAACCAAAGACTTCATCTTTAAGGTGGATGACGTGGTTTCTTTCATTTCACTCCCTCTGTCGCTCTTTCTTCTTTGTGTATCGGTTAAAGGAGCCACTGGGGTTATACCGACAGAACAAACACAACCACCTATTGACGACGAAACGAAGCTACATCTAAGAAACTCTGAGGTTACTTCCTTTGCTTCAGCTTCTATAGTTTCCAAGGCATTTTGGATTTGGATTAACCCGTTACTGAGTAAAGGGTACAAATCACCGCTGAAGATTGATGAGATTCCAACACTTTCTCCAGAGCATAGAGCAGAGAAGATGTCAATTTTGTTTGAAGCAAAATGGCCTAAAACAAACGAGAGTAATAAGCACCCAGTTAGAATCACTTTGATTCGGTGCTTCTGGAAGGAACTTGCATTCACCGCATTCCTTGCCATTGTTAGGCTTTGTGTGATGTTTGTAGGACCGGTTCTCATACAAAGCTTTGTTGATTTCACATCAGGGAAGAGAAGCTCTGTGTATGAAGGATATTACCTTGTGTTGATTCTTCTCATTGCTAAATTCATAGAAAGCATGACCACTCACCATTTCAACTTCAATGCTCAGAAGCTTGGGATGCTTATCCGTTGCACACTTACCCCTTCTTTGTACAAGAAAGGGTTAAAGCTTTCCTTCTCTGCTCGGCAGGATCATGGTGTAGGAACCATTGTGAATTACATGGCGGTTGATACACAACAACTCTCTGATATGATGCTTCAGTTACATTCTTTATGGATGATGCCACTTCAAGTTGGAATTGCCTTATTTCTGCTTTACAATTGTCTTGGTGCCTCAGCAGTTACTGCATTGCTTGGACTTATTGGTATTATTGTATATTCTGTGATTGGTACCCGTAGAAACAACAGGTTCCAATTTAATGTGATGCTGAACCGTGACTCAAGAATGAAAGGTGTGAATGAGATGCTTAATTACATGCGTGTGATAAAGTTTCAGGCTTGGGAAGAACATTTCAATGGGAGAATTATGGGTTTCCGTGGGTCAGAATATGCTTGGCTTTCCAAGTTAATGTTCTCAATCTGTGGCAATATTATTGTGATGTGGAGCACACCTTTATTGATAGCAACTCTCACTTTTGGTACGGCTATTTTGCTTGGAGTTCAGCTTGATGCAGCCACGGTCTTCACCACAACAACTGTGTTCAAGATCTTGCAGGAACCTATTAGGACATTCCCACAGTCTATGATATCTCTTTCTCAAGCAATGATATCACTAGAGAGGTTAGATAGGTTCATGTTGAGCTCAGAATTGTCTAATGATTCAGTTGAGAGAGAGGAAGGGTGTGGTGGAGAAACAGCAGTTGAAGTTAAAGATGGGAACTTTGGTTGGGATGATGATAGCCTGCATCATCAGGATTTGAAAAGTATTAATTTGGAGATCAAAAAGGGAGAGCTTACAGCAATTGTTGGGACTGTGGGGTCAGGAAAGTCATCTCTCCTTGCATCAATTCTTGGTGAGATGTGCAAAATTTCTGGAAAGGTTCGGGTTTGTGGGAGTATTGCTTATGTTGCACAAACATGTTGGATTCAAAATGGGACAATTGAAGAAAACATTCTCTTTGGTTTACCAATGGACAGAAATAAGTACAATGATGTCATCAAGGTGTGTTGCTTGGAGAAAGATTTGGAAATGATGGATTTTGGGGATCAGACAGAGATTGGAGAGCGTGGAATCAACCTAAGTGGAGGCCAGAAGCAGCGTATACAACTTGCCAGAGCTGTATATCAAGACCGTGATATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCACACTGGTTCTGAAATATTTAAGGAATGCGTGAAGGGAGCTCTAAAAGGCAAGACTGTTATTCTTGTAACACACCAAGTAGATTTCCTACATAATGTGGATCTTATATTAGTAAGTCTCTTTTCCTACATAATGCTAAAGGTGATGAGGGATGGAATGATAGTCCAATCAGGAAAATACAATGATCTACTAGATTCTGGAATGGATTTTAAAGCTTTGGTAGCTGCACATGAGACCTCAATGGAACTAGTAGAGCAGGGTGCAGGTATACCTGGTGAAAATTTGAACAAACCAATGAAATCTTCAGAGGCAGATTCTATTTACAAGGGAACCAAAGGTGAAAGCAATTCTGTTGAACAGTCAGAGTCTGGCAAGAAAAGTTCTAAACTTATCAAAGAAGAAGAGAGAGAAACTGGCAAAGTGAGCTTACATATCTATAAACTCTACTGCACTGAGGCTTTTGGGTGGTGGGGAATTACAGGAGTAGTGCTTCTTTCTTTGTTATGGCAAGGGACTTTGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCAGAAAAGCGTGCTCAAATGTTTAACCCTTCCCTTTTTATTTCCATCTATGCAATTATTTCTGTTGTTTCAGTTATTGTGGTAGTGATAAGATCCTACTCCTTTACATTCATGGGGCTAAAGACAGCACAACTTTTCTTCACACAAATTCTTCATAGCATCTTGCATGCGCCCATGTCTTTCTTTGATACTACACCATCTGGGAGAATTCTAAGCAGGGCATCCACTGATCAGACCAATGTTGATATCCTTCTCCCTTTGTTCATGGGAGTTGTTATTGCCATGTACATCACAGTGCTCAGCATCTTAATCGTCATCTGTCAAAATTCTTGGCCAACAGTGTTCTTGATAATTCCTCTTGTTTGGTTGAATATATGGTACCGGGGTTACTATCTTGCTTCATCTCGTGAATTAACTCGCCTGGATTCAATTACCAAAGCACCTCTGATTCATCACTTCTCTGAAAGCATTGCAGGGGTCATGACAATACGTGCATTTAGAAAGCAAAAGAAATTTTGTGAAGAAAATCTCAAACGGGTAAATGCTAATTTGAGAATGGATTTCCACAACTATAGCTCCAATGAGTGGTTGGGACTACGCTTAGAATTGCTTGGAAGCTTTGTCTTTTGCATCTCTGCTATGTTCATGATCATCTTACCTAGCAGTATCATAAAGCCAGAAAACGTTGGTTTATCTCTCTCTTATGGTTTGTCCTTAAATTCGGTGTTGTTCTGGTGTGTATACATGAGCTGTTTTGTTGAAAACAAAATGGTATCTGTTGAGAGGATAAAACAGTTTACAAATATTCCATCAGAATCAGCATGGAATATCCAGGATTATTTGCCTCCTTCAAATTGGCCAGGTCAAGGCAATGTAGATATCAAAGACTTGGAGGTCAGATATCGTCCAAGCACTCCTTTGGTTCTTAAAGGCATTACTTTAAGCATTAGTGGAGGAGAAAAGATTGGTGTTGTTGGTCGAACTGGGAGTGGAAAATCAACTTTGATTCAAGTTTTCTTTAGGCTGGTGGAACCTTCAAGAGGGAAAATAATAATTGATGGTATTGACATATCTGTTTTGGGGCTTCATGATCTTAGATCTCGGTTTGGTATCATTCCTCAGGAGCCTGTCCTTTTTGAAGGAACTGTTAGAAGTAACATTGATCCAATTGGACAGTACACAGATGAAGAGATATGGCAGAGCTTGGAACGCTGTCAGCTAAAAGAAGTGGTGGCTGCTAAGCCTGAAAAACTTGACTCTTTAGTGGTGGATAATGGAGAGAACTGGAGTGTGGGGCAGAGACAGTTGCTTTGTTTAGGGCGGGTTATGCTTAAGCGAAGCAGGCTCTTGTTTATGGATGAGGCAACTGCTTCTGTTGATTCTCAAACTGATGGTGTAATTCAAAGGATCATTAGAGAAGACTTTGCAGCATGTACCATCATCAGCATTGCTCACAGAATCCCCACAGTCATGGACTGTGATAGAGTCTTAGTTGTAGATGCAGGGAGAGTGAAAGAATTTGATAATCCCTCCAACTTGCTTCAGAGGCAATCTCTATTTGGGGCATTAGTTCAAGAGTATGCCAATCGCTCCACAGGACTATAA 4563 0.4063 MSPAYATLITSLSCSSPMKQTSEDTLISTILQWLRFIFFSPCPQRALLSAVDVLLLLILFIFAVIKLYKRFTSNGDSPNELNKTLISKNRYSTITTTWFKLTLTVTIVLAILDTVACVLVFSSSAKLQWKQVDGVFWLVQAITHAVLAISIIHEKRFEAVTHPMLLRVYWVVNFIIISLFTASGVVRFVSVDVDETKDFIFKVDDVVSFISLPLSLFLLCVSVKGATGVIPTEQTQPPIDDETKLHLRNSEVTSFASASIVSKAFWIWINPLLSKGYKSPLKIDEIPTLSPEHRAEKMSILFEAKWPKTNESNKHPVRITLIRCFWKELAFTAFLAIVRLCVMFVGPVLIQSFVDFTSGKRSSVYEGYYLVLILLIAKFIESMTTHHFNFNAQKLGMLIRCTLTPSLYKKGLKLSFSARQDHGVGTIVNYMAVDTQQLSDMMLQLHSLWMMPLQVGIALFLLYNCLGASAVTALLGLIGIIVYSVIGTRRNNRFQFNVMLNRDSRMKGVNEMLNYMRVIKFQAWEEHFNGRIMGFRGSEYAWLSKLMFSICGNIIVMWSTPLLIATLTFGTAILLGVQLDAATVFTTTTVFKILQEPIRTFPQSMISLSQAMISLERLDRFMLSSELSNDSVEREEGCGGETAVEVKDGNFGWDDDSLHHQDLKSINLEIKKGELTAIVGTVGSGKSSLLASILGEMCKISGKVRVCGSIAYVAQTCWIQNGTIEENILFGLPMDRNKYNDVIKVCCLEKDLEMMDFGDQTEIGERGINLSGGQKQRIQLARAVYQDRDIYLLDDVFSAVDAHTGSEIFKECVKGALKGKTVILVTHQVDFLHNVDLILVSLFSYIMLKVMRDGMIVQSGKYNDLLDSGMDFKALVAAHETSMELVEQGAGIPGENLNKPMKSSEADSIYKGTKGESNSVEQSESGKKSSKLIKEEERETGKVSLHIYKLYCTEAFGWWGITGVVLLSLLWQGTLMASDYWLAYETSEKRAQMFNPSLFISIYAIISVVSVIVVVIRSYSFTFMGLKTAQLFFTQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDILLPLFMGVVIAMYITVLSILIVICQNSWPTVFLIIPLVWLNIWYRGYYLASSRELTRLDSITKAPLIHHFSESIAGVMTIRAFRKQKKFCEENLKRVNANLRMDFHNYSSNEWLGLRLELLGSFVFCISAMFMIILPSSIIKPENVGLSLSYGLSLNSVLFWCVYMSCFVENKMVSVERIKQFTNIPSESAWNIQDYLPPSNWPGQGNVDIKDLEVRYRPSTPLVLKGITLSISGGEKIGVVGRTGSGKSTLIQVFFRLVEPSRGKIIIDGIDISVLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDEEIWQSLERCQLKEVVAAKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFMDEATASVDSQTDGVIQRIIREDFAACTIISIAHRIPTVMDCDRVLVVDAGRVKEFDNPSNLLQRQSLFGALVQEYANRSTGL. 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05039 1520 CDD ABCC_MRP_domain1 644 840 - -
Seca2g05039 1520 Gene3D - 1262 1511 IPR027417 -
Seca2g05039 1520 MobiDBLite consensus disorder prediction 908 933 - -
Seca2g05039 1520 Pfam ABC transporter 1295 1443 IPR003439 GO:0005524
Seca2g05039 1520 MobiDBLite consensus disorder prediction 910 926 - -
Seca2g05039 1520 Gene3D - 620 890 IPR027417 -
Seca2g05039 1520 Gene3D ABC transporter type 1, transmembrane domain 319 619 IPR036640 GO:0005524|GO:0016020
Seca2g05039 1520 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 644 878 IPR003439 GO:0005524
Seca2g05039 1520 SMART AAA_5 1304 1488 IPR003593 GO:0016887
Seca2g05039 1520 SMART AAA_5 672 852 IPR003593 GO:0016887
Seca2g05039 1520 Pfam ABC transporter transmembrane region 331 597 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g05039 1520 Pfam ABC transporter transmembrane region 972 1214 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g05039 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 876 IPR027417 -
Seca2g05039 1520 CDD ABCC_MRP_domain2 1276 1496 - -
Seca2g05039 1520 ProSitePatterns ABC transporters family signature. 770 784 IPR017871 GO:0005524|GO:0016887
Seca2g05039 1520 CDD ABC_6TM_ABCC_D1 331 618 IPR044746 GO:0140359
Seca2g05039 1520 FunFam ABC transporter C family member 5 924 1259 - -
Seca2g05039 1520 SUPERFAMILY ABC transporter transmembrane region 320 622 IPR036640 GO:0005524|GO:0016020
Seca2g05039 1520 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1280 1512 IPR003439 GO:0005524
Seca2g05039 1520 CDD ABC_6TM_ABCC_D2 961 1253 IPR044726 GO:0140359
Seca2g05039 1520 FunFam ABC transporter C family member 10 313 626 - -
Seca2g05039 1520 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 256 1513 - -
Seca2g05039 1520 FunFam ABC transporter C family member 4 627 896 - -
Seca2g05039 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1271 1511 IPR027417 -
Seca2g05039 1520 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 963 1241 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g05039 1520 Pfam ABC transporter 663 796 IPR003439 GO:0005524
Seca2g05039 1520 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 330 610 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g05039 1520 FunFam ABC transporter C family member 3 1261 1512 - -
Seca2g05039 1520 Coils Coil 1149 1169 - -
Seca2g05039 1520 SUPERFAMILY ABC transporter transmembrane region 958 1258 IPR036640 GO:0005524|GO:0016020
Seca2g05039 1520 Gene3D ABC transporter type 1, transmembrane domain 924 1259 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05039 Seca-Chr2 136973672 136980017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05039 600 871 Calmodulin-binding Proteins AT2G36910 30.450 3.61e-21 99.4