Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05020 ATGACGAAGAGGAAAAGTAATAGGATTGGGAAGGAGAGGAGGAAGATGAAGGGGACGCTGGGTAGCAGGCACTTGCAGCTTCAGCTTAGCCAAGTCTCTCTCATTCCCCCAATTTCTTCTACTTCTTCCGCCGTTCCTCGCTTCCAGAACCTTCTCGATGCCGAGGCCAATGATGATCCTTCCTCTCGCGCTACGCTCATGGACGATGCTGCCGCCGCAGACGACAGAGATTTCATTCTCAGCCAGGACTTCTTTTGCACTCCAGATTACATAACCCCAGATAATCAGCATATTTTGAACGGTTTGGATTGCAACAAGGAAAATACACCTTGCCCTAAATCACCGGAGAAGCTGAATACTACAAAAAGCAAGAGATGCCGACTGGATGCTATCTCAGTCAACCCTCTCAGTCCTACCTTTTCTGGTGACCATCAACAAGTTGTGGAACTTGGAAAGGATTCTGTTGCCGAGGAAGTTGCTGCTGAGAAAACAGTAGCCGCTGGTAAACCAAAGGCTCAAAATTATGTGTCACATTCTGCAGTTGCATTGCGTTGTAGGGTTATGCCTCCTCCTTGTATTAGGAACCCCTATTTGAAAGATGCTTCAGAAAAGGAGATAGATCCCTTTGGAAACCAAAGATCAAAATGTGAAGGTCTCTTCCCTGCAATTGCTGGTGGTGATGGGCTTTCACGCTATCGCACTGACTTTCATGAGATTGAGCAAATTGGTAGAGGGAACTTCAGTAGTGTTTTCAAAGTATTAAAGCGAATAGATGGCTGCTTGTATGCTGTGAAACGCAGCACTAGACCGTTACGCCTGGAAACAGATAGGAGAAAAGCCTTGATGGAAGTTCAAGCTCTGGCAGCCTTGGGTTTGTATTTTACATCTTCACCACTTCACATATTTTCTTCTGCATAA 918 0.4586 MTKRKSNRIGKERRKMKGTLGSRHLQLQLSQVSLIPPISSTSSAVPRFQNLLDAEANDDPSSRATLMDDAAAADDRDFILSQDFFCTPDYITPDNQHILNGLDCNKENTPCPKSPEKLNTTKSKRCRLDAISVNPLSPTFSGDHQQVVELGKDSVAEEVAAEKTVAAGKPKAQNYVSHSAVALRCRVMPPPCIRNPYLKDASEKEIDPFGNQRSKCEGLFPAIAGGDGLSRYRTDFHEIEQIGRGNFSSVFKVLKRIDGCLYAVKRSTRPLRLETDRRKALMEVQALAALGLYFTSSPLHIFSSA. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05020 305 ProSitePatterns Protein kinases ATP-binding region signature. 242 265 IPR017441 GO:0005524
Seca2g05020 305 ProSiteProfiles Protein kinase domain profile. 236 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05020 305 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 91 291 - -
Seca2g05020 305 MobiDBLite consensus disorder prediction 1 20 - -
Seca2g05020 305 SUPERFAMILY Protein kinase-like (PK-like) 230 290 IPR011009 -
Seca2g05020 305 Gene3D Phosphorylase Kinase; domain 1 227 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05020 Seca-Chr2 136854743 136858979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05020 1 293 Core Cell Cycle Gene Families AT1G02970 52.649 3.80e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Seca2g05020 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05020 K06632 - gmx:547742 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05020 2 136854743 136858979 Seca2g05020 2 136854743 136858979 ECH