Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05018 ATGGGTGATAATAATATTGGGAAAGTCTCAGATAGAAAAGATGTTACTGGGGTGGTTAAAGAGCAAGAGCAATTGCTTCCAATAGCTAATGTGGGGCGTATTATGAAGCAAATTCTGCCTCCTAATGCAAAAATCTCGAAGGAAGCTAAAGAAACCATGCAGGAATGCGTCTCTGAGTTCATAAGCTTTGTTACCGGAGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACGCTCAATGGCGATGATATTTGTTGGTCCTTGGCTACCCTTGGATTTGATGACTACGCTGACCCACTCAAAAGGTATCTGAATAAGTATAGGGATTTGGAGGGGGATCATCGACAGAGCTAA 357 0.4314 MGDNNIGKVSDRKDVTGVVKEQEQLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTLNGDDICWSLATLGFDDYADPLKRYLNKYRDLEGDHRQS. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05018 118 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 115 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca2g05018 118 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Seca2g05018 118 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Seca2g05018 118 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Seca2g05018 118 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 89 IPR003958 -
Seca2g05018 118 FunFam Nuclear transcription factor Y subunit B-3 14 118 - -
Seca2g05018 118 ProSitePatterns NF-YB/HAP3 subunit signature. 56 72 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca2g05018 118 SUPERFAMILY Histone-fold 22 116 IPR009072 GO:0046982
Seca2g05018 118 Gene3D Histone, subunit A 15 118 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05018 Seca-Chr2 136834684 136835040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05018 18 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 82.474 3.92e-58 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca2g05018 CBFD_NFYB_HMF 5.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05018 K08065 - gmx:100817274 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05018 2 136834684 136835040 Seca2g05018 2 136834684 136835040 ECH