Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05009 ATGGGATGGTATTGTTACAGATACTCGCCAACAATACTTCTTCTTCGTCATTTTGATGTTTTTCGAGATTCGCATTCACCTGAGGGTTCACTAAATGATCAAAGAGGCAATACATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCAGTCAGTGAACACGGTGATAGTAACTCCCTAATGAAATCAAACGGTGAATTGGTGGAGAAGAATGCTGAAAAGACAAGTGGGCATCAGGTCCTGTTGATTGCAGCTGCTGACAGTTCAGAAGGTCTGCCTCCAACTATCAGACGCTGCTTTAGCCATGAAATAAGCATGGGGCCTTTGACTGAAGAGCAAAGGGCTGAGATGCTATTACAGTCACTGCAAAGTATTTCTGGACTTCTCTCTAATACTGATTCGGAGGGTTTTGTAAAAGAAATAGTTGGACAGACATCTGGCTTTATGCCCAGGGATATGTGTGCTTTAATTGCTGATGCCGGTGCCAACTTATTTCCCAAGAGCAATGCTGAAGTGGACAAGCATGGACCTGAAGGTGTAGATAGTTCCCTTGGTTCCAAGGTGGCAGAGGACAACAATGAGTTAAAAGCTTCACCTGGGATTCCTGGGAAGGAAGACATGATGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTAGGCACTCCAAAGGTTCCAAATGTGAAATGGGAAGATGTTGGTGGGCTCGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTACCTCTCCTGCATAAAGATCTATTTTCATCTGGGTTACGCAAGCGGTCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAACATTATTAGCAAAAGCTGTTGCTACAGAATGCTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTATATAGGAGAGTCTGAGAAGAATGTTCGAGACATTTTCCAAAAGGCCAGATCAGCACGGCCATGTGTCATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGAGGTGCTTCTGGAGATTCTGGGGGTGTTATGGACAGGGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCTTAAGTGATTCAACACAGGATCTATTTATTATAGGTGCTAGTAATAGACCAGATTTGATAGACCCAGCACTTTTGCGCCCTGGTCGATTTGATAAACTGCTATATGTTGGAGTTAACTCTGATGCATCTTACCGGGAGCGGGTACTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTTTCACTTTACTCTATAGCAGAAAAATGTCCACCAAACTTCACCGGTGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTCCATGCTGCAAAGCGCAAGGTTTTAAGTGCAAATCCAGAGTCTTCCAGCCAAGACAATGATGCAGATTCTGTTGTTGTTGAATACAATGATTTTGTCCAGGTCTTAGCAGAGCTGCCACCTTCCCTCTCCATGGCTGAGCTTAGGAAGTACGAGAAACTGAGAGATCAATTTCAAGGAACCTCTAAATGA 1551 0.4333 MGWYCYRYSPTILLLRHFDVFRDSHSPEGSLNDQRGNTSEVASVIRKFTEPVSEHGDSNSLMKSNGELVEKNAEKTSGHQVLLIAAADSSEGLPPTIRRCFSHEISMGPLTEEQRAEMLLQSLQSISGLLSNTDSEGFVKEIVGQTSGFMPRDMCALIADAGANLFPKSNAEVDKHGPEGVDSSLGSKVAEDNNELKASPGIPGKEDMMNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAEKCPPNFTGADMYALCADAWFHAAKRKVLSANPESSSQDNDADSVVVEYNDFVQVLAELPPSLSMAELRKYEKLRDQFQGTSK. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05009 516 MobiDBLite consensus disorder prediction 170 206 - -
Seca2g05009 516 CDD RecA-like_PEX6_r2 242 401 IPR047533 -
Seca2g05009 516 PANTHER AAA-FAMILY ATPASE 6 513 - -
Seca2g05009 516 Pfam ATPase family associated with various cellular activities (AAA) 270 402 IPR003959 GO:0005524|GO:0016887
Seca2g05009 516 SMART AAA_5 266 406 IPR003593 GO:0016887
Seca2g05009 516 FunFam Peroxisomal biogenesis factor 6 228 417 - -
Seca2g05009 516 ProSitePatterns AAA-protein family signature. 373 391 IPR003960 GO:0005524|GO:0016887
Seca2g05009 516 Gene3D - 228 505 IPR027417 -
Seca2g05009 516 FunFam Peroxisome biogenesis protein 6 404 490 - -
Seca2g05009 516 Gene3D - 111 174 - -
Seca2g05009 516 Gene3D - 404 490 - -
Seca2g05009 516 Gene3D - 75 110 IPR027417 -
Seca2g05009 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 510 IPR027417 -
Seca2g05009 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 167 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05009 Seca-Chr2 136727466 136732163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05009 236 461 Calmodulin-binding Proteins AT3G56690 39.648 1.24e-41 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05009 K13339 - gmx:100820183 901.353