Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05007 ATGGTATCCCTGAAACTGCAGAAGCGATTGGCCGCAAGCGTTCTCAAATGCGGAAGGGGGAAGGTTTGGCTTGACCCCAATGAAGGCAATGAAATCTCCATGGCCAATTCTCGTATGCACTTAAGCACTGCTCAGCTTGATGAGTTTTTGCTTGCAGGTCAAAACATTAGGAAGTTGGTTAAGGATGGGTTTATCATCAGAAAGCCAACTAAGATTCACTCCCGGTCACGTGCTCGCAGGATGAAGGAGGCTAAGAGGAAGGGGCGTCACTCTGGATATGGTAAGCGTAAGGGTACCAGGGAGGCAAGGCTTCCCACCAAAATACTTTGGATGAGGAGGATGCGTGTGCTCAGAAGATTGCTTCGTAAGTACAGGGAATCAAAGAAAATTGACAAACACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGAGAGTCTTGATGGAGAGCATTCACAAGTCCAAGGCTGAGAAGGCAAGAGAGAAGACTTTGTCTGATCAGTTTGAGGCGAAGCGCGCAAAGAACAAGGCTAGCAGGGAAAGGAAAATCGCTAGGAGGGAGGAGCGCTTGGCCCATGGTCCTGGTGGTGATAAGCCATCAACAGCACCCAGTGCTCAACCTGCTGCAGCAGCCCAGCCTACCCAAGCACCGAAGAAATCCAAGAAGTGA 687 0.4876 MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRMHLSTAQLDEFLLAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAHGPGGDKPSTAPSAQPAAAAQPTQAPKKSKK. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05007 228 Gene3D - 72 199 - -
Seca2g05007 228 Pfam Ribosomal protein L19e 4 160 IPR000196 GO:0003735|GO:0005840|GO:0006412
Seca2g05007 228 MobiDBLite consensus disorder prediction 72 100 - -
Seca2g05007 228 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Seca2g05007 228 FunFam Ribosomal protein L19 72 203 - -
Seca2g05007 228 PANTHER 60S RIBOSOMAL PROTEIN L19 1 202 IPR039547 GO:0003723|GO:0003735|GO:0022625
Seca2g05007 228 MobiDBLite consensus disorder prediction 159 228 - -
Seca2g05007 228 Gene3D - 2 71 IPR015972 GO:0003735|GO:0005840|GO:0006412
Seca2g05007 228 SUPERFAMILY Ribosomal protein L19 (L19e) 3 159 IPR035970 GO:0003735|GO:0005840|GO:0006412
Seca2g05007 228 CDD Ribosomal_L19e_E 4 182 IPR033935 GO:0003735|GO:0022625
Seca2g05007 228 MobiDBLite consensus disorder prediction 72 94 - -
Seca2g05007 228 MobiDBLite consensus disorder prediction 159 200 - -
Seca2g05007 228 SMART Ribosomal_L19e_2 3 161 IPR000196 GO:0003735|GO:0005840|GO:0006412
Seca2g05007 228 FunFam Ribosomal protein L19 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05007 Seca-Chr2 136720430 136722999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05007 1 228 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 78.947 2.52e-123 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05007 K02885 - rcu:8278777 344.739