Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05004 ATGGAATTGTACGGTCGGAACCCGGCAAGGAATGGGTCAAACCCGGGGAATCAACCCGAATGGCGCTCACCAGCCGGCGATACTAGTCTCGAAGAATCCATGTGGCACTTGACGCTCAGTAGCAGCGAATCGTACCCGGAGCGACCCGGTGTTCCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATATGGTAGCAGGTGTCGGTACAATCATCCTCGTGATCGAGCTGCGGTTGCGGCAGCTGTAAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAGCCTCCATGTCAGTATTATTTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTCCACCATCCGAAACATGGAGGTGGATCTTTGAGCCAAGCTCCACTAAATATTTATGGATACCCTTTACGGCCGGTTTGA 426 0.5117 MELYGRNPARNGSNPGNQPEWRSPAGDTSLEESMWHLTLSSSESYPERPGVPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPV. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05004 141 Gene3D - 47 128 - -
Seca2g05004 141 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Seca2g05004 141 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Seca2g05004 141 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Seca2g05004 141 PANTHER PROTEIN PHOSPHATASE RELATED 32 140 - -
Seca2g05004 141 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Seca2g05004 141 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Seca2g05004 141 MobiDBLite consensus disorder prediction 1 27 - -
Seca2g05004 141 FunFam Zinc finger nuclease 2 47 124 - -
Seca2g05004 141 MobiDBLite consensus disorder prediction 10 24 - -
Seca2g05004 141 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Seca2g05004 141 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Seca2g05004 141 SMART c3hfinal6 93 120 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05004 Seca-Chr2 136700554 136702006 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05004 90 140 C2H2 Transcription Factor Family AT3G02830 52.941 1.36e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca2g05004 zf-CCCH 3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05004 - - gmx:100805017 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05004 2 136700554 136702006 Seca2g05004 2 136700554 136702006 ECH