Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g05004 | ATGGAATTGTACGGTCGGAACCCGGCAAGGAATGGGTCAAACCCGGGGAATCAACCCGAATGGCGCTCACCAGCCGGCGATACTAGTCTCGAAGAATCCATGTGGCACTTGACGCTCAGTAGCAGCGAATCGTACCCGGAGCGACCCGGTGTTCCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATATGGTAGCAGGTGTCGGTACAATCATCCTCGTGATCGAGCTGCGGTTGCGGCAGCTGTAAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAGCCTCCATGTCAGTATTATTTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTCCACCATCCGAAACATGGAGGTGGATCTTTGAGCCAAGCTCCACTAAATATTTATGGATACCCTTTACGGCCGGTTTGA | 426 | 0.5117 | MELYGRNPARNGSNPGNQPEWRSPAGDTSLEESMWHLTLSSSESYPERPGVPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPV. | 142 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g05004 | 141 | Gene3D | - | 47 | 128 | - | - | |
Seca2g05004 | 141 | ProSiteProfiles | Zinc finger C3H1-type profile. | 93 | 121 | IPR000571 | GO:0046872 | |
Seca2g05004 | 141 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 96 | 120 | IPR000571 | GO:0046872 | |
Seca2g05004 | 141 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 50 | 75 | IPR000571 | GO:0046872 | |
Seca2g05004 | 141 | PANTHER | PROTEIN PHOSPHATASE RELATED | 32 | 140 | - | - | |
Seca2g05004 | 141 | SUPERFAMILY | CCCH zinc finger | 52 | 77 | IPR036855 | GO:0046872 | |
Seca2g05004 | 141 | SUPERFAMILY | CCCH zinc finger | 96 | 120 | IPR036855 | GO:0046872 | |
Seca2g05004 | 141 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Seca2g05004 | 141 | FunFam | Zinc finger nuclease 2 | 47 | 124 | - | - | |
Seca2g05004 | 141 | MobiDBLite | consensus disorder prediction | 10 | 24 | - | - | |
Seca2g05004 | 141 | ProSiteProfiles | Zinc finger C3H1-type profile. | 48 | 76 | IPR000571 | GO:0046872 | |
Seca2g05004 | 141 | SMART | c3hfinal6 | 48 | 75 | IPR000571 | GO:0046872 | |
Seca2g05004 | 141 | SMART | c3hfinal6 | 93 | 120 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g05004 | Seca-Chr2 | 136700554 | 136702006 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g05004 | 90 | 140 | C2H2 Transcription Factor Family | AT3G02830 | 52.941 | 1.36e-12 | 61.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Seca2g05004 | zf-CCCH | 3e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g05004 | - | - | gmx:100805017 | 268.085 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca2g05004 | 2 | 136700554 | 136702006 | Seca2g05004 | 2 | 136700554 | 136702006 | ECH |