Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05003 ATGCCGGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACAGTTCCCCTGCCTGACCAGTATGGGGGAGCATCCACGAGCTTGAGAGTGGCTAGGCCTCCTATGTTGCCTGGTTCATATGTACAGGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAATCCGTACTCGGCACCTGTAAGTCCTGTATTATCTCCTGGTGCACAACCTGCTGTCGGGACTACTTCTCTATATGGAGTGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCGTACACTCCTCTTCCCTCTTCTACTGGCCCTTTGGGCAGTAACCCAAAGGAACAAGTGTTTCCTGAAAGACCTGGTGAACCTGAATGCCAATATTATCTGAGAACAGGGGATTGTAAATTTGGGTTAGCTTGTCGATATCATCATCCTCGAGACCGGGTAACACAGCCACTTCTCAGCCCCATTGGTCTTCCTCTACGTCCGTTGTAG 513 0.499 MPASAPQFYQQVQSPTVPLPDQYGGASTSLRVARPPMLPGSYVQGAYGPVLLSPGVVPFPGWNPYSAPVSPVLSPGAQPAVGTTSLYGVTQLSSSTSAFARPYTPLPSSTGPLGSNPKEQVFPERPGEPECQYYLRTGDCKFGLACRYHHPRDRVTQPLLSPIGLPLRPL. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05003 170 PANTHER PROTEIN PHOSPHATASE RELATED 8 169 - -
Seca2g05003 170 SMART c3hfinal6 125 152 IPR000571 GO:0046872
Seca2g05003 170 SUPERFAMILY CCCH zinc finger 129 155 IPR036855 GO:0046872
Seca2g05003 170 MobiDBLite consensus disorder prediction 1 23 - -
Seca2g05003 170 ProSiteProfiles Zinc finger C3H1-type profile. 125 153 IPR000571 GO:0046872
Seca2g05003 170 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 152 IPR000571 GO:0046872
Seca2g05003 170 Gene3D - 110 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05003 Seca-Chr2 136698144 136700364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05003 3 169 C2H2 Transcription Factor Family AT5G18550 52.632 1.44e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca2g05003 zf-CCCH 2.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05003 - - lja:Lj5g3v1665190.3 331.643