Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04996 ATGAACGAACACTCTGCACCTGCAACTGAAAGGAGACATGACTTCGGAAAGTTGCAACATGGATGTGAGCACTATAAGAGAAGATGCAAAATTCGAGCCCCATGCTGCAATCAGATTTTCTCATGTCGTCACTGTCACAACGAATCTATGAGCTCATCCAGCAACTCCAGGGATGTTCATGAACTTGTTAGACGCGATGTTAAGCAGGTTATATGTTCAATCTGTGATACTGAGCAGGAGGTAGAACGAATTTCATTTATCCATTTTGCTTGA 273 0.4249 MNEHSAPATERRHDFGKLQHGCEHYKRRCKIRAPCCNQIFSCRHCHNESMSSSSNSRDVHELVRRDVKQVICSICDTEQEVERISFIHFA. 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04996 90 SUPERFAMILY CHY zinc finger-like 17 82 IPR037274 GO:0008270
Seca2g04996 90 Pfam CHY zinc finger 22 82 IPR008913 GO:0008270
Seca2g04996 90 ProSiteProfiles Zinc finger CHY-type profile. 15 90 IPR008913 GO:0008270
Seca2g04996 90 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 8 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04996 Seca-Chr2 136621767 136622489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04996 20 84 C2H2 Transcription Factor Family AT3G18290 41.538 1.53e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04996 K10144 - gmx:100818374 131.339