Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04994 ATGAATGGTTCTCCGAGACAGAGACACACACACACTGTTCCTTCATATAAAGAAGAACAAGAAGCATCACAAGCACAACTAGCTCGACCATGTGACTATTGTGAACACTCCACAGCAGTTCTCTACTGCAGAGCTGACTCAGCAAAGCTCTGTTTCTCTTGTGATCGTGAAGTTCACTCCACCAATCAGCTTTTCTCAAAGCACACTCGCACTCTCCTCTGTGATGCCTGCGATGATTCCCCTGCTACCATACTCTGTTCCACTGAAACCTCTGTTCTCTGCCAGAACTGTGACTGGGAAAAACACAAACTTTCCCTTTCCTCCGTGCATGAAAGAAGGCCTATTGAAGGGTTCACTGGGTGCCCTTCTGTTACTGAACTCTTATCCTTTGTGGGGTTCCAAGATTTAGGGAAAAAAGCGCTGCTTTCACCTCAGGAAAGTGGAGTTGCAGGGGATGGGTTTCTGGGGTATGCTATTGAAGAAGGGCTTTCCGATTTGTTTGTCTGGGATGCTCCTTCTGTTGTTAGTCTTGATGATTTGATTTCTTCTTCTGCTTCTTCTCATAACTATCAGGCCATGGAGGTTCCTCCTTTGCCCAAGAATCGTAATGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGTGAACTAACAAAGTCTGAGCCCTTGGATGAACCTGATCAGTATGTGCAATCAGGAAATTTGTCCACAGGTTTTGAACGTGACATAGAGAATGACATCTTTCCTGTTCATGAGTGGCATAGAGAAAGCAGTGAGACTATGTGTCAAGTTGTTCCTCTTGATATGTCATTGAGAGCTTATAACAAAGAAATTCCAGTTAAACATTCTACTTCTGCTGTTGGGGAGACTCATACCTATGGAAACAATGGAGGTAAACCTTCAAATTCTCTCAAGTCTGAAACCTTATCAACTACTCCAAAAGCTGTGCCACATGAGTTAGCGAGTCAAGAAAGGGATTCTGCATTATTACGGTACAAGCAGAAGAGGAAAACAAGAAGAGCTTGGATATTACAAAATTTACCTGAATATGTGCTTCCAAGCAGTTCAAGAACAATGAATGCTGAGGGGGCAATGGGGAAAAGGGAACAAATCAAAGTGTTAAGTGCAAAAACAAAGGGGGATAGTACTGGAATATTACAAACAAATGGAGTACATACTGCGGTTGGAAATGGAGCAGAAAAGATACATCGGAGAAGGGAGCATTTTACTAGCTACTGCATTCTACTGTAG 1260 0.4325 MNGSPRQRHTHTVPSYKEEQEASQAQLARPCDYCEHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTETSVLCQNCDWEKHKLSLSSVHERRPIEGFTGCPSVTELLSFVGFQDLGKKALLSPQESGVAGDGFLGYAIEEGLSDLFVWDAPSVVSLDDLISSSASSHNYQAMEVPPLPKNRNAACGRHREEILSQLRELTKSEPLDEPDQYVQSGNLSTGFERDIENDIFPVHEWHRESSETMCQVVPLDMSLRAYNKEIPVKHSTSAVGETHTYGNNGGKPSNSLKSETLSTTPKAVPHELASQERDSALLRYKQKRKTRRAWILQNLPEYVLPSSSRTMNAEGAMGKREQIKVLSAKTKGDSTGILQTNGVHTAVGNGAEKIHRRREHFTSYCILL. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04994 419 SMART bboxneu5 74 115 IPR000315 GO:0008270
Seca2g04994 419 SMART bboxneu5 26 73 IPR000315 GO:0008270
Seca2g04994 419 CDD Bbox1_BBX-like 73 115 - -
Seca2g04994 419 MobiDBLite consensus disorder prediction 290 319 - -
Seca2g04994 419 ProSiteProfiles Zinc finger B-box type profile. 69 115 IPR000315 GO:0008270
Seca2g04994 419 ProSiteProfiles Zinc finger B-box type profile. 26 73 IPR000315 GO:0008270
Seca2g04994 419 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 30 343 - -
Seca2g04994 419 Pfam B-box zinc finger 29 71 IPR000315 GO:0008270
Seca2g04994 419 Pfam B-box zinc finger 73 115 IPR000315 GO:0008270
Seca2g04994 419 CDD Bbox1_BBX-like 30 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04994 Seca-Chr2 136604776 136608465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04994 26 343 C2C2-CO-like Transcription Factor Family AT2G47890 40.176 2.41e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Seca2g04994 zf-B_box 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04994 - - gmx:100777428 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04994 2 136604776 136608465 Seca2g04994 2 136604776 136608465 ECH
Seca2g04994 2 136604776 136608465 Seca2g04994 2 136604776 136608465 PCT