Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04984 ATGGAAGGCGTAGCAAGAGAGAGGCTTAGCCTTGCTCCTCACTCATCCTCCGGTGACCGAGGTGGGGACGATGATTTGTATTGTGAACTGTGGCATGCATGCGCGGGGAGAGTGTATGTTCCTGAGGTTGGAGAGAAGGTATTCTACTTTCCACAGGGTCACTTGGAGCAGGTTGCTGCTTTTACTCAACATCAGCAAGATGGTCACATGGAAATTCCAGTATATGATTTGCCTTTTAAGATCTTATGCAGGGTTATGTCTGTTCAGTTAAAGGCTGAAGCTCACACAGATGAAGTTTTTGCTCAAGTTACATTGCTTCCGGAGTCCAAGCAAGATGATCTTAGTTCAGAAGACACTAGTGAGATACCTCGCAGAACTAAACCCTACTCTTTTAGCAAGATACTCACTCCATCAGACACAAGCACACATGGTGGATTCTCTATTCCGAAGCGACATGCAGATGAATGCTTCCGCCCTCTGGACATGACTCTTCAAACACCAATGCAAGAGCTGGTTGCGAAGGACTTGCATGGGTTCGAGTGGCATTTTCGGCATATATATCGCGGTCAGCCGAAAAGACACTTGCTTACTAGCGGTTGGAGCACATTTGTTAATTCAAAAAAACTTGTCGCTGGAGACGCATGCATTTTCGTTAGTGGAGACAATGGAGAAATTCGTGTTGGGATTCGTCGAGCAACGAAACAACACAACAATGGAGCCACATCTTCATCTCTGATATCAGGCCATAGCATGCAACTTGGAATTTTGACCAGTGCTTCCCATGCTGTTGCCACAGGATCCATGTTCAGTGTCTATTACCGCCCTTGGACGAATCCCTTTGAATTTATTATTCCTGTGAAAAACTACATGAAGTCAACTGAAGTGGACTATTCAATTGGAACGAGAGTACAAACGCTGCTACAAGTTGAAGAATCTACAAGAAGATATGCAGGTACGATAATTGGTATTGGAGATATCGATAAGATTAGGTGGCCTGGTTCAAAATGGAAATGTCTCAAGGTGCAATGGGATGCCATACTAAATACGTATGTTAATCCTGAGAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGAACCTGTCAAGAATAAGCGCGTTCCTGTTCTCCCCCAACCAAACAAGGCACGTGCACTTAACCCGCCATTGCCTGGATTAAATGGCTTTGCCAATGATGGCACAGTTCAGAATTCAGCCAGACCTGCATCTCAGAGAGTGGATAGGGAATTGCAAGGTGAAGATTACAATGGCTTATGTTCTCCACAACCTTTGCAAAAGCCACCATCAACAGATGTCCTCCTACCAATGAAGGTCCCCACCATTGTGATGAAGAATCCAAATCAGCTTCCCTCTTTTAAGCAAGACCATCTTCACCAATCTCTTGGAAGCTCAGTGTCATTTTCACATCAAGACATATCAACTTCAAATTCAAATGTGAAATCCACTCTTTCTGAATCCCAGGGATGGCCTCCCTCTGAATCTAAAGATGAAAATGATTTTACTTTTGGCCAACCTGGCAGCAGCAGCAGATTCAAGCTTTTTGGGGTTAGTTTAATTGATGGGCAACCGGAGCTCCCTTCACCACAATTTTCTACTTTTAGCAAAATTTATACTCCAATATGTGTTACCGCTGGGAAAACATGCAAGAAGTGTCGCTCTGTTAATAGGAGTTGCACAAAGGTGCTTAAGATGGGAACTGCTCTTGGAAGAGCGATTGACCTCACCCGTTTAGGTGGATATGATGAGCTCATTTCTGAACTCGACCGGATGTTTGATTTTGGAGGAAGCTTAATCAATGGAAGCAGCGGATGGCATGTGACCTGCATAGATGATGATGGAGATATGATGCTGTTAGCGGATTACCCTTGGCAGGATTTCCAATCCGTGGTACAAAAGATGATCATATGTCCAAAGGATGGTACTAACAATCCCAATCCAAGCTCCTCAGCAGATCCTTCAAGGCTTTAG 1983 0.4448 MEGVARERLSLAPHSSSGDRGGDDDLYCELWHACAGRVYVPEVGEKVFYFPQGHLEQVAAFTQHQQDGHMEIPVYDLPFKILCRVMSVQLKAEAHTDEVFAQVTLLPESKQDDLSSEDTSEIPRRTKPYSFSKILTPSDTSTHGGFSIPKRHADECFRPLDMTLQTPMQELVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNSKKLVAGDACIFVSGDNGEIRVGIRRATKQHNNGATSSSLISGHSMQLGILTSASHAVATGSMFSVYYRPWTNPFEFIIPVKNYMKSTEVDYSIGTRVQTLLQVEESTRRYAGTIIGIGDIDKIRWPGSKWKCLKVQWDAILNTYVNPERVCPWWIEPLEPVKNKRVPVLPQPNKARALNPPLPGLNGFANDGTVQNSARPASQRVDRELQGEDYNGLCSPQPLQKPPSTDVLLPMKVPTIVMKNPNQLPSFKQDHLHQSLGSSVSFSHQDISTSNSNVKSTLSESQGWPPSESKDENDFTFGQPGSSSRFKLFGVSLIDGQPELPSPQFSTFSKIYTPICVTAGKTCKKCRSVNRSCTKVLKMGTALGRAIDLTRLGGYDELISELDRMFDFGGSLINGSSGWHVTCIDDDGDMMLLADYPWQDFQSVVQKMIICPKDGTNNPNPSSSADPSRL. 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04984 660 MobiDBLite consensus disorder prediction 378 411 - -
Seca2g04984 660 FunFam Auxin response factor 129 233 - -
Seca2g04984 660 Gene3D - 129 233 IPR015300 -
Seca2g04984 660 MobiDBLite consensus disorder prediction 395 409 - -
Seca2g04984 660 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Seca2g04984 660 SUPERFAMILY CAD & PB1 domains 565 637 - -
Seca2g04984 660 MobiDBLite consensus disorder prediction 470 507 - -
Seca2g04984 660 SUPERFAMILY DNA-binding pseudobarrel domain 126 261 IPR015300 -
Seca2g04984 660 Gene3D - 296 369 - -
Seca2g04984 660 ProSiteProfiles PB1 domain profile. 561 644 IPR000270 GO:0005515
Seca2g04984 660 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 643 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca2g04984 660 MobiDBLite consensus disorder prediction 1 21 - -
Seca2g04984 660 FunFam Auxin response factor 296 368 - -
Seca2g04984 660 Gene3D - 557 648 - -
Seca2g04984 660 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Seca2g04984 660 Pfam Auxin response factor 259 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca2g04984 660 CDD B3_DNA 130 231 IPR003340 GO:0003677
Seca2g04984 660 SMART B3_2 131 233 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04984 Seca-Chr2 136465339 136475128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04984 560 653 B3 DNA Binding Superfamily AT5G62000 44.681 6.46e-22 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca2g04984 AUX_IAA 2.2e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04984 - - lja:Lj1g3v4764520.2 958.747