Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04980 ATGGAAAGCATAAAATGGAGTATTTTGGACCTTCAAGCGGCATTCAGCCACAAAATCCTATTGGGTTCAAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAGGCTCGAAGAGCTCAAAAAGCACAGTCCCAAGCTTCTAATGTACCACATGCTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCTATGGGTTATGTTCCTCCATATAATGGTTATGGTTATCAGGCTCCTGGAAGTTATGGGATCATGCCATACCGCATGCCACCAATGCAGAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCAAGGAAATGCATTGCGGCCTGATCTTGGTCCCAATATGAACCCTAGAAATTATCATGTGCCTCCTGCAAGTTACGTTAGCTCTTATCCTGCTGTGCCAGGCCTACAACATCCAATGGCGTATCCTGCAGGAATGATTAGTCCAAGGCCTATGAGCAGTCCTCCTGGTTCTGTCTCACCTGCTGGTGGAAATAACAACTCCGCTACATCTTCAGGGGCCAGCAAAAATTCCGGGGGTCAGGTTGAAGGACCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCAACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCCCCAGAAGCTGCTCAATCTGCCATTAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACAGGGCAAACCTTACTGA 849 0.4393 MESIKWSILDLQAAFSHKILLGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHADSQHPSLFGALPMGYVPPYNGYGYQAPGSYGIMPYRMPPMQNQPGFHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVSSYPAVPGLQHPMAYPAGMISPRPMSSPPGSVSPAGGNNNSATSSGASKNSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQHKRDNKQGKPY. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04980 282 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 162 276 - -
Seca2g04980 282 MobiDBLite consensus disorder prediction 155 194 - -
Seca2g04980 282 SUPERFAMILY RNA-binding domain, RBD 187 279 IPR035979 GO:0003676
Seca2g04980 282 MobiDBLite consensus disorder prediction 39 59 - -
Seca2g04980 282 Gene3D - 168 274 IPR012677 -
Seca2g04980 282 SMART rrm1_1 198 271 IPR000504 GO:0003723
Seca2g04980 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 269 IPR000504 GO:0003723
Seca2g04980 282 FunFam RNA-binding protein BRN1 164 274 - -
Seca2g04980 282 MobiDBLite consensus disorder prediction 167 188 - -
Seca2g04980 282 MobiDBLite consensus disorder prediction 44 58 - -
Seca2g04980 282 CDD RRM3_CELF1-6 199 271 - -
Seca2g04980 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04980 Seca-Chr2 136422887 136429133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04980 190 277 Eukaryotic Initiation Factors Gene Family AT1G22760 37.363 2.33e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04980 K13207 - gmx:100813239 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04980 2 136422887 136429133 Seca2g04980 2 136422887 136429133 ECH
Seca2g04980 2 136422887 136429133 Seca2g04980 2 136422887 136429133 PCT