Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g04971 | ATGCCGGCTGGTCATGGTTTGAGATCTCGCACCAGAGACTCCTTCTCTCGACCATTCAGGAAGAAGGGTACCATTGCCCTCACCACCTACCTCAGGACCTACCACATCGGCGATTATGTCGACATCAAGGTTAACGGCGCCGTCCACAAAGGTATGCCTCACAAGTTCTACCATGGCCGCACCGGACGCGTCTGGAACGTCACCAAACGCGCCATTGGCGTCGAAGTCAACAAGCAGCAGGTTGGGAACAGAATAATCAGAAAGAGGATTCATGTCCGTGTGGAGCATGTGATGCCTTCAAGGTGCACGGAGGAGTTCCGTCTTAGGAAGGTCAAGAATGATCAACTCAAGGCTGAGGCTAAGGCCAAGGGAGAGGTCATTAGCACCAAGAGACAGCCAGAGGGTCCCAAACCAGGTTTCATGGTTGAAGGAGCTACATTGGAGACTGTTACTCCAATTCCTTATGATGTCGTAAATGACCTCAAGGGAGGATACTAG | 498 | 0.5181 | MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKVKNDQLKAEAKAKGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY. | 166 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g04971 | 165 | Gene3D | - | 100 | 157 | - | - | |
Seca2g04971 | 165 | ProSitePatterns | Ribosomal protein L21e signature. | 37 | 62 | IPR018259 | GO:0003735|GO:0005840|GO:0006412 | |
Seca2g04971 | 165 | Gene3D | Ribosomal protein L21 | 1 | 98 | IPR036948 | GO:0003735|GO:0005840|GO:0006412 | |
Seca2g04971 | 165 | FunFam | 60S ribosomal protein L21 | 1 | 99 | - | - | |
Seca2g04971 | 165 | Pfam | Ribosomal protein L21e | 1 | 102 | IPR001147 | GO:0003735|GO:0005840|GO:0006412 | |
Seca2g04971 | 165 | PANTHER | 60S RIBOSOMAL PROTEIN L21 | 1 | 164 | IPR001147 | GO:0003735|GO:0005840|GO:0006412 | |
Seca2g04971 | 165 | FunFam | 60S ribosomal protein L21 | 100 | 159 | - | - | |
Seca2g04971 | 165 | SUPERFAMILY | Translation proteins SH3-like domain | 3 | 100 | IPR008991 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g04971 | Seca-Chr2 | 136346642 | 136348148 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g04971 | 1 | 165 | Cytoplasmic Ribosomal Protein Gene Family | AT1G09690 | 83.636 | 1.72e-103 | 292 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g04971 | K02889 | - | gmx:100305629 | 329.331 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca2g04971 | 2 | 136346642 | 136348148 | Seca2g04971 | 2 | 136346642 | 136348148 | ECH |