Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04965 ATGGGTGCCAATTCATTGCTATCCGAGTCGACTCACGATCTCGACGAGCAGATCTCCCAGCTCATGCAGTGCAAACCACTCTCTGAGCAACAGGTTAGAGAATTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTCCAGAGAAAGAAAACATTAATTTCTTCTTCTTCTTTTTGTATCTCTCATGTACCACAGCCTGTGAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACTAACTACTTGTTTATGGGCGATTATGTGGATCGGGGTTATTATTCAGTTGAGACTGTAACACTCCTTGTGGCACTAAAAGTGAGGTATCCTCAGCGAATTACTATTCTTAGAGGAAATCATGAAAGTCGTCAGATTACTCAAGTATATGGATTTTACGATGAATGCCTAAGAAATATGACATGCAGCTTTGTCAGTGATGATGTGATGGATGTTGTATGGTATGGTAGTGCTAATGTTTGGAAGATCTTTACAGACCTTTTTGATTTTTTTCCATTGACTGCATTGGTTGAATCAGAAATATTCTGTTTGCATGGTGGACTGTCGCCTTCAATTGAGACCCTTGACAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTATTGTGGTCTGACCCAGATGATAGATGTGGCTGGGGGATTTCTCCTCGTGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAATTCAATCACACAAACAGCCTAAAATTGATTGCTAGAGCTCATCAGCTGGTCATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCTCCTAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTAGAAGTTGATGATTGCAAGGGCCACACATTTATCCAGTTTGAACCCGCTCCGAGGAGAGGAGAGCCTGATGTCACCCGTAGAACACCTGATTACTTTCTGTAA 1041 0.4179 MGANSLLSESTHDLDEQISQLMQCKPLSEQQVRELCEKAKEILMDESNVQRKKTLISSSSFCISHVPQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRNMTCSFVSDDVMDVVWYGSANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04965 346 SUPERFAMILY Metallo-dependent phosphatases 10 331 IPR029052 -
Seca2g04965 346 Pfam Calcineurin-like phosphoesterase 73 279 IPR004843 GO:0016787
Seca2g04965 346 SMART pp2a_7 27 330 IPR006186 GO:0016787
Seca2g04965 346 PRINTS Serine/threonine phosphatase family signature 135 159 IPR006186 GO:0016787
Seca2g04965 346 PRINTS Serine/threonine phosphatase family signature 270 290 IPR006186 GO:0016787
Seca2g04965 346 PRINTS Serine/threonine phosphatase family signature 102 129 IPR006186 GO:0016787
Seca2g04965 346 PRINTS Serine/threonine phosphatase family signature 214 241 IPR006186 GO:0016787
Seca2g04965 346 PRINTS Serine/threonine phosphatase family signature 73 100 IPR006186 GO:0016787
Seca2g04965 346 PRINTS Serine/threonine phosphatase family signature 292 308 IPR006186 GO:0016787
Seca2g04965 346 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 12 346 IPR047129 GO:0004722
Seca2g04965 346 FunFam Serine/threonine-protein phosphatase 7 346 - -
Seca2g04965 346 Gene3D - 7 346 IPR029052 -
Seca2g04965 346 ProSitePatterns Serine/threonine specific protein phosphatases signature. 136 141 IPR006186 GO:0016787
Seca2g04965 346 CDD MPP_PP2A_PP4_PP6 13 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04965 Seca-Chr2 136269192 136275761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04965 72 276 Calmodulin-binding Proteins AT5G63870 33.058 1.24e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04965 K04382 - gmx:100775812 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04965 2 136269192 136275761 Seca2g04965 2 136269192 136275761 ECH