Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04962 ATGTCGATTTTATCAAGCATGGACATGCCAACAGTTGATGTGGACCTTGGGCCTGAGAAGATTGAAGATGAGAAAGAGGGAGGTCCCTTGGTTCACTGTGATCTTTGTGATACAGAAGTAGTTCACAAGTTGGCTCAAATGTTCCTTCCAGGACTAGCCAGTGCTTGTGTTGATAACACATCAGGAGATCTCTTCAAGACTCCTGGTTCTGTGGCTGTTGATCTGAGAAAGGAACTGATAGATTATCTTACCCAGAGGAGTGAATCATTTGTTGCCGAGTCTATTATCTTGGAAGGTGGTCCGGATGGTGAAGTATCAGATCATCCTTTTGATATCATTTCCAATTTTGTTGATGACTTTGCCAGTTCAAAGAGGAATTTGTTTAGCCGGGTTTCAGGATGGCTGCTGAGTGACAAGAGAGAAGACAAAATAGATGATTTCGTTCAAGAGATGGAAATGAATGGTTTTTGGACGCTTGATAGAAGAGAAACAATTGCAGAAACTTTGCTTAAGAATGTTGATTTTGAGAACTCATTTCACTGCAGCATGAAATTTAATTCTGCAGAAGAGCTTGCTAATCATGTTGATGATTGCAACTTTAGAACTATGATCTGTGACAATGAGGGATGCAATGCTAGGTTTTGTGCAGGTCATTTGAAGAAGCATGATTCAACTTGTCCTTTCAAGATAATTCCATGTGAACAGAAATGTTCAGATAACATTATGAGGCGGGATATGGACAGGCACTGTATAACTGTTTGTCCAATGAAGCTTGTAAATTGTCCTTTTTATGCAGTGGGTTGTAGATCTGCTGTTGCACAATGTATGATTGAAAAACACCGTTCAGATGATGTTAATTCTCACTTGTGGCACTTGCTTAAAGGTATATACAAGGAAGCATCTGGGGATGATCTTAAATGA 921 0.3974 MSILSSMDMPTVDVDLGPEKIEDEKEGGPLVHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFKTPGSVAVDLRKELIDYLTQRSESFVAESIILEGGPDGEVSDHPFDIISNFVDDFASSKRNLFSRVSGWLLSDKREDKIDDFVQEMEMNGFWTLDRRETIAETLLKNVDFENSFHCSMKFNSAEELANHVDDCNFRTMICDNEGCNARFCAGHLKKHDSTCPFKIIPCEQKCSDNIMRRDMDRHCITVCPMKLVNCPFYAVGCRSAVAQCMIEKHRSDDVNSHLWHLLKGIYKEASGDDLK. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04962 306 Pfam TRAF-type zinc finger 222 280 IPR001293 GO:0008270
Seca2g04962 306 ProSiteProfiles Zinc finger TRAF-type profile. 222 269 IPR001293 GO:0008270
Seca2g04962 306 SUPERFAMILY TRAF domain-like 205 277 - -
Seca2g04962 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 287 IPR013083 -
Seca2g04962 306 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 31 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04962 Seca-Chr2 136225932 136230062 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04962 - - gmx:100799182 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04962 2 136225932 136230062 Seca2g04962 2 136225932 136230062 ECH
Seca8g04996 8 139305705 139310196 Seca2g04962 2 136225932 136230062 PCT