Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04948 ATGAGGAACTTGTTGTCTCGTGTCAATAGAACGACAAAGAAAAACATCAGAAACAGAAACAGAAACACACGCAAGCTCACAAACCAAAACTGCATTTCCATTACGAAAGAGTTTCCATGTCTTGTAGAAGAAGAAGAAGAAGAAGAAACTGAGGAAGGTTTCAGCATCAAAAGCTCTGCCCCATCACACACCCATGGCGTTCAGCCCTTAGGCAATCTCTATCTCAACCCAGGTTCCATCAACTCCAGAGACACCGGTTTAGGTAATCTTCATACCCTTACGGATGAGCTTGTTCTTGATATTCTTGGGTTTTTGGATGGTACCAGCTTGGGGGTTTTGGCCTCTGTGAGCAAGTCATTTTATGTATTTACCAATCATGAACCCCTTTGGAGGAATCTCGTTTTGGAGAATCTTCTTGGTGGGTTTCGTTACAATGGGTCTTGGAAATCTACTTATGTTGCTGCTTGTTACCCTTCATTTGATATCTCTAGTAAAGCTCTTCGGAGTTTCAAAGTTAGAGACTTTTACTCTGATTATCTTTTCCAGAGTTGGCTCTGTGCCAATCTCGAAATGAAGCCTGAATGGTTGGAGAGGGATAATATAGTTAGAAGGAAAGGCCTTTCTGTTGAAGAATTTGTGTTGAATTTTGAGGAGCCTAATAAGCCTGTGTTATTGGAAGGGTGTCTTGATAATTGGGATGCATTGAGAAATTGGGATAGGGATTATTTGGTGAAGTTGTGTGGTGATGTTAAGTTTGCAGTCGGGCCAGTGGAGATGAAGCTTGGAGACTATTTTGAGTACTCGGATCAAGTTAGAGAAGAAAGACCATTGTATTTGTTTGATTCAAAATTTGCTGAAAAAGTTCCAAAATTGGGTTCTGAATATGGTGTTCCAATATATTTTCAGGAGGATTTGTTTGGTGTTTTGGGCAATGAGAGACCTGACTACAGGTGGGTTATTATTGGACCAGCTGGGTCTGGGTCCTCTTTCCATGTTGATCCAAATTCAACTTCAGCTTGGAATGCAGTGATCAAGGGTTCCAAGAAATGGATATTATTTCCTCCTGATGTAATTCCACCTGGCGTTCATCCTAGTCCTGATGGTGCAGAGGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGTGCAACAAAAAATTGGAAAAAGAAACCAATTGAGTGCATATGTAAAGCTGGGGAGGTTATCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCTATAGCCATAACACAAAACTATGTTAGTAGTGGCTGTGGATTTTGA 1311 0.4096 MRNLLSRVNRTTKKNIRNRNRNTRKLTNQNCISITKEFPCLVEEEEEEETEEGFSIKSSAPSHTHGVQPLGNLYLNPGSINSRDTGLGNLHTLTDELVLDILGFLDGTSLGVLASVSKSFYVFTNHEPLWRNLVLENLLGGFRYNGSWKSTYVAACYPSFDISSKALRSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRRKGLSVEEFVLNFEEPNKPVLLEGCLDNWDALRNWDRDYLVKLCGDVKFAVGPVEMKLGDYFEYSDQVREERPLYLFDSKFAEKVPKLGSEYGVPIYFQEDLFGVLGNERPDYRWVIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKKPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSSGCGF. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04948 436 FunFam F-box protein At1g78280 181 431 - -
Seca2g04948 436 SUPERFAMILY F-box domain 85 156 IPR036047 GO:0005515
Seca2g04948 436 MobiDBLite consensus disorder prediction 1 22 - -
Seca2g04948 436 ProSiteProfiles F-box domain profile. 87 133 IPR001810 GO:0005515
Seca2g04948 436 Pfam F-box-like 95 135 IPR001810 GO:0005515
Seca2g04948 436 SUPERFAMILY Clavaminate synthase-like 200 432 - -
Seca2g04948 436 Gene3D - 83 159 - -
Seca2g04948 436 SMART cupin_9 277 434 IPR003347 -
Seca2g04948 436 Gene3D Cupin 169 431 - -
Seca2g04948 436 Pfam Cupin-like domain 211 429 IPR041667 -
Seca2g04948 436 ProSiteProfiles JmjC domain profile. 286 436 IPR003347 -
Seca2g04948 436 SMART fbox_2 93 133 IPR001810 GO:0005515
Seca2g04948 436 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 87 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04948 Seca-Chr2 136069911 136072879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04948 78 431 Glycosyltransferase AT1G78280 38.904 1.15e-76 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca2g04948 Cupin_8 1.7e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04948 - - gmx:100782241 764.992