Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04939 ATGGAGGTTCCAGAGATGGAAAGCAAGACTGAAACTCACATGACATCGGCTGTGGCCTTTGTTGAAGGGGGCATTCAAGAATCCTGTGATGATGCTTGCAGTATATGCCTTGAGGAGTTTTGTGAAAGTGATCCTTCAACGGTCACAACTTGTAGGCATGAGTTTCACCTGCAGTGCATTCTTGAATGGGGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAATCTATTAGCTTGAAGGATCCTACCAGTCAGGAATTGTTTGAGGCGGTAGAGCAGGAGAGGAAGCTGAGGGTTACTCCATCAAGGAATGCTGCTATTTTTCGTCACCCTGCCCTTGGTGATTTTGATTTGCAGCAACTACGCATGAGTGTCAATGATGCTGATCTTGAAGAGCGAATAATCCAACATTTAGCTGCTGCTGCAGCAATGGGGAGAGCCAACCACCTTGTTCGGAGGGAAGTGCAGCGAACTCGGGGAAATGAACCAGCTGCAATTCCGATAGGAAGTCCATCTACCCCAATAACATCTGATGGAGATGGACCATCACGGCAGATCTCACATCTTCAAGCCCATAGCTCTTCATCTTCTGGATCTTCTGTCATGACAACAAATGGCCAAAGAAATTACTCTAATGCTAGAGGCTCTACCGCTCAGTCTTCACCAGTGAACCAAGATGGAGCAGGGCCATCAGAATTCCAGTCATTTTCTGATTCTCTGCGGTCCAGACTTAATGCAGTATCTATGAGATACAAAGAGTCAATTTCAAAAGGGGCAAGGGGATGGAGGGAGAGGCTGTTCTCTCGAAATTCTTCCATGTCAGAAATTGATGCAGAAGCTAGGAGAGAGGTGAGTACTGGGATTGCTAGTGTGTCCCGATTGATGGAATCCCTTGGAACTAGAGAAAATAATAGCTCTGTTGGTGCTTCTTTGTCAAATCATTTGGAGGATGGTTCTATGGCAGAGGTGAGGAACCACAGCAATGTTGAAGCTAGTGGGGAAAGCTCTTCACACCACAACAATTCTCCAGCTGCGTGTTCTGCTAACTCACATTCAAGTTGA 1062 0.4652 MEVPEMESKTETHMTSAVAFVEGGIQESCDDACSICLEEFCESDPSTVTTCRHEFHLQCILEWGQRSSQCPMCWQSISLKDPTSQELFEAVEQERKLRVTPSRNAAIFRHPALGDFDLQQLRMSVNDADLEERIIQHLAAAAAMGRANHLVRREVQRTRGNEPAAIPIGSPSTPITSDGDGPSRQISHLQAHSSSSSGSSVMTTNGQRNYSNARGSTAQSSPVNQDGAGPSEFQSFSDSLRSRLNAVSMRYKESISKGARGWRERLFSRNSSMSEIDAEARREVSTGIASVSRLMESLGTRENNSSVGASLSNHLEDGSMAEVRNHSNVEASGESSSHHNNSPAACSANSHSS. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04939 353 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 17 82 - -
Seca2g04939 353 SUPERFAMILY RING/U-box 25 81 - -
Seca2g04939 353 MobiDBLite consensus disorder prediction 299 313 - -
Seca2g04939 353 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Seca2g04939 353 SMART ring_2 33 73 IPR001841 -
Seca2g04939 353 FunFam E3 ubiquitin-protein ligase RHF2A 4 107 - -
Seca2g04939 353 Pfam Ring finger domain 32 73 IPR001841 -
Seca2g04939 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 82 IPR013083 -
Seca2g04939 353 MobiDBLite consensus disorder prediction 299 353 - -
Seca2g04939 353 MobiDBLite consensus disorder prediction 325 353 - -
Seca2g04939 353 MobiDBLite consensus disorder prediction 157 236 - -
Seca2g04939 353 MobiDBLite consensus disorder prediction 170 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04939 Seca-Chr2 135971006 135975329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04939 30 73 C3H Transcription Factor Family AT5G15790 52.273 8.76e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04939 K19043 - gmx:100800419 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04939 2 135971006 135975329 Seca2g04939 2 135971006 135975329 ECH
Seca8g05042 8 139826199 139831590 Seca2g04939 2 135971006 135975329 PCT