Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04935 ATGGGAAACAATTGTGTTGGATCAAGAGTCTCAAAAGATGGACTAATTCCTTCTGTTCTTCCAAGTTCATTCTGGTGGTCACAGCCAACTAGTGGAATAGTAATCAATGGTGCATCTTCACCTGTGAGTAAAAATCCCAACACAAATGTTCAACAAAAAGCTCCAGAGATAGTGAAAATTGACAACAAGGAGATGAAGCCAGTTCAATCCAATAAACAGGACAAAGAGGCTAATAAGAAGCCTTCAGAGGAACAAATAAGGCACGTGGAAATGGAGCATGCTAGAGTAGCCCCAAAGATGCACCATAAGAAGAGGCTAGCAGTAGCAACTGCTGGGCTTCAAGCAGAGTCAGTTTTGCTGACAAAGAGTGGTCATTTTAAGGAGTACTATAATTTAGGACTTGAACTTGGGAAAGGACAATATGGAACTACTTCCCTTTGCTTGGAGAAAGCTACTGGGAAAAAGTATGCCTGCAAGTCCATCCCAAAGGTGAAATTGGTGAGACATGATGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGCGGGTAGTCCAAATGTGATCTCAATTAAAGGGGCTTATGAGGATGCTGTTGCAGTTCATGTTGTCATGGAATTATGTTCAGGGGGTGAGTTGTTTGATAGGATTGTGGAAAGGGGGCATTACACAGAAAGAAAGGCAGCTAAACTTGCAAGGACTATAGTTAGTGTCATAGAGTCTTGCCATTCCCTTGGAGTAATGCATCGTGATCTTAAGCCTGAGAATTTTCTTTTTGTTGATGGGCATGAAGACTCCACCCTTAAGGCAATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGAGACATTTTTAGTGACGTGGTAGGGAGTCCTTATTATATTGCACCTGAAGTTCTACGCAAGCGTTATGGACCAGAAGCTGATGTATGGAGTGCAGGTGTTATCATATACATTCTCTTAAGTGGAATGCCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAGGAGGTTTTGTATGGCGATCTTGATTTCTCTTCAGATCCTTGGCCAAATATCTCTGGAAGTGCAAAAGACTTGGTTAGGAAGATGCTTGTTAGAGATCCTAGAAAACGGTTAACAGCACATGAAGTTCTTTGCCACCCTTGGATTCAGGTTGATGGAGTTGCTCCGGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTTAAGCAGTTTTCAGCAATGAGCAAGCTCAAGAAGATGGCTCTTAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTACTGGATTGAAAGAAATGTTTAAGATGATAGACACAGACAACAGTGGTCAAATTACTTTTGAAAAACTCAAGAATGGGCTGAAAATGTTTGGTGCTAATCTCAGTGAATCTGAAATTTTCGATCTAATGCAAGCTGCAGATGTTGACAACAGTGGTGCAATTGACTATAGAGAATTCATAGCTGCCACATTGCATTTAAACAAAGTTGACAAGGAAGATCATTTACTTGCAGCTTTCTCATATTTTGATAAAGATGGAAGTGGCTACATCACTCAAGATGAGCTTCAACAAGCTTGTGAAGAATTTGGCATGGAGGATGTTCTCTTGGAGGAATTGATCCAAGAAGCTGATCAGAATCATGATGGCCGAATAGACTACAATGAATTTGTGGCTATGATGCAGAGAGGAAATGCAGATTTAGGTAGGAGTGGTCTAAAGGGTAACACTAGTTTTAGCTTTGGATTTAGGGAGGCTCTATCAGTATGCTAA 1788 0.4105 MGNNCVGSRVSKDGLIPSVLPSSFWWSQPTSGIVINGASSPVSKNPNTNVQQKAPEIVKIDNKEMKPVQSNKQDKEANKKPSEEQIRHVEMEHARVAPKMHHKKRLAVATAGLQAESVLLTKSGHFKEYYNLGLELGKGQYGTTSLCLEKATGKKYACKSIPKVKLVRHDDVEDVRREIQIMHHLAGSPNVISIKGAYEDAVAVHVVMELCSGGELFDRIVERGHYTERKAAKLARTIVSVIESCHSLGVMHRDLKPENFLFVDGHEDSTLKAIDFGMSVFFKPGDIFSDVVGSPYYIAPEVLRKRYGPEADVWSAGVIIYILLSGMPPFWGESEQEIFEEVLYGDLDFSSDPWPNISGSAKDLVRKMLVRDPRKRLTAHEVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMSKLKKMALRVIAENLSEEEITGLKEMFKMIDTDNSGQITFEKLKNGLKMFGANLSESEIFDLMQAADVDNSGAIDYREFIAATLHLNKVDKEDHLLAAFSYFDKDGSGYITQDELQQACEEFGMEDVLLEELIQEADQNHDGRIDYNEFVAMMQRGNADLGRSGLKGNTSFSFGFREALSVC. 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04935 595 CDD STKc_CAMK 130 387 - -
Seca2g04935 595 PANTHER SERINE/THREONINE-PROTEIN KINASE 117 562 - -
Seca2g04935 595 MobiDBLite consensus disorder prediction 37 86 - -
Seca2g04935 595 Pfam Protein kinase domain 132 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04935 595 SMART serkin_6 130 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04935 595 Gene3D Transferase(Phosphotransferase) domain 1 216 393 - -
Seca2g04935 595 ProSitePatterns EF-hand calcium-binding domain. 550 562 IPR018247 -
Seca2g04935 595 SUPERFAMILY EF-hand 417 568 IPR011992 -
Seca2g04935 595 SUPERFAMILY Protein kinase-like (PK-like) 128 389 IPR011009 -
Seca2g04935 595 MobiDBLite consensus disorder prediction 57 86 - -
Seca2g04935 595 CDD EFh 507 567 IPR002048 GO:0005509
Seca2g04935 595 FunFam Calcium-dependent protein kinase 1 132 215 - -
Seca2g04935 595 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Seca2g04935 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Seca2g04935 595 Gene3D Phosphorylase Kinase; domain 1 133 215 - -
Seca2g04935 595 ProSiteProfiles EF-hand calcium-binding domain profile. 503 538 IPR002048 GO:0005509
Seca2g04935 595 SMART efh_1 435 463 IPR002048 GO:0005509
Seca2g04935 595 SMART efh_1 471 499 IPR002048 GO:0005509
Seca2g04935 595 SMART efh_1 507 535 IPR002048 GO:0005509
Seca2g04935 595 SMART efh_1 541 569 IPR002048 GO:0005509
Seca2g04935 595 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
Seca2g04935 595 Pfam EF-hand domain pair 507 567 IPR002048 GO:0005509
Seca2g04935 595 FunFam Calcium-dependent protein kinase SK5 216 400 - -
Seca2g04935 595 Gene3D - 395 571 - -
Seca2g04935 595 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
Seca2g04935 595 MobiDBLite consensus disorder prediction 37 55 - -
Seca2g04935 595 ProSitePatterns EF-hand calcium-binding domain. 516 528 IPR018247 -
Seca2g04935 595 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Seca2g04935 595 FunFam Calcium-dependent protein kinase 1 396 570 - -
Seca2g04935 595 ProSiteProfiles Protein kinase domain profile. 130 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04935 595 ProSiteProfiles EF-hand calcium-binding domain profile. 542 572 IPR002048 GO:0005509
Seca2g04935 595 Pfam EF-hand domain pair 448 498 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04935 Seca-Chr2 135945745 135950061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04935 1 589 EF-hand Containing Proteins AT5G04870 65.484 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca2g04935 Pkinase 1.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04935 K13412 - gmx:100814475 917.146