Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04920 ATGAAGGTGACTAAAAGGAAGGTATCACTAAAACTGATTGAGAATTTGAAAGTGAGAAAATGTTGTTACAAAAAAAGAACTCTAGGCTTGTTAAGGAAGATAAAGGAGCTTTCCATACTTTGTGGTATCCCTACATGCTCAGCCATCTATGGTCCAGGTGATACTAAGCCTAAAATATGGCCATCCCCTAAAGTGGCTAAACAACTACTAAAGAGGCTTGAGGAAGTTCCAAAGGGTGTTAAGTCCAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTGCCAGGCTCAAGGAGAGGAACAATGAGAAAGATATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAGCCTAGTGATTTGAAGTGTTTACTTGGTTATGTGGAGCAAAAATTGAACAAAGTTAGAATGAGAACCAAGCATTTTAAGGAGGAGTTACCTCCTAATCCTCCACCACCACCACCGGTGTCTTGTCCTCAAGAAAATGAGGTCCTAGAGAAACAATCATTCTTAGATTTGGTGAAAGACACTAATCAGGTGAATAGTGGTTTTGATGATAATAATGTGGGTAGTAGCAGCATAGGGCTACCACCACCACCACCACATGCAAATCTTAGTGATGTTGATATGGTGTTTCCCCAAGAGAATTCTGGAGGTTTCAATAATGTGAGTGATTTAGGGGTGTTTCCTCCAACCAATTTTGGAGATCTCATTGGTGAAAGTGACATAGGGTCAGAGGTGTTCCCTCTTAGTGATTTTGGAGGCTCCATTGGTAAGAGTCACTCAGGGTTAGGGGCGTTTCCTCTAGAGAATTTCAGAAATCTCAATGGTGAAAGTGATCACTTGGGGTTAGAGGTGTTGCCTCCTCAAGCAAATTTTGAAGGTCTTAATGGTGAAAATGACTTGTGGTTTTTACCTCAAGGAAATTTTGAAGGTTTCAATGGTGAAAATGACTCGTGGTTGTTACCTCAAGGCTATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGACAATTATAAAGGTCTCAATGTTGGAAGTGACTCAGGGGTGTTACCTCAAGGCACTTTTGGAGGTCTCAATGGTGAAAGTGATGAAGACAATTATGGAAGTCTCAATGTTGGAAGTGACTCAGGGGTGTTACCTCAAGGAAATTTCAGAGGTCTCAATGGTGAAAGTGATGAAGGCAATTATGGAAGTCTCAATGTTGGAAGTGACTTAGGGGTGTTACCTCAAGGAAATTTTGGAAGTCTCAATGGTGAAAGTGATGAAGGTAATTATGGAGGTCTCAATGTTGGAAGTGACTCAGGGGTTTTACCTCAAGGCAATTTCGGAGGTCTCAGCGGTGAAAGTGATGAAGACAATTATGGAAGTCTCAATGTTGGATGCGACTTAGGGGTGTTACCTCAAGGAAATTTTGGAGGTCTTATTGGTGAAAGTGATGAAGGAAATTATGAAGGTCTCAATGTTGGAAGTGACTCAGGGGTTTTACCTCAAGACAATTTTGGAGGTCTCAATGGTGAAAGTGATTTAGGAATATTGCTTGAAGACAATTTTGAAGGTCTCAATGGTGAAAGGGGTGATAGTTCACAGGCGTGGCCTGAAAGCAATTTTGGAGATCTCAATGATAGAAGTGATCTCTTAGAGATGTATAATTTTAAAGGTCTCAATAGTGAAAGTGGTGATAGTTCACGGGTACTGCCTGAAGGCAATTTTGGAGATCTCAATGATGGAAGTGATCTCGTAAAGATGTATATTGAAGGTAATTTTGAAGGTCTCAATGGTGAAAGTAATTCAGGGATTCTGAATGGAAGCTCTACTGATGAAATTGGAGGTAGTAACATATGGCCATCTTATGGACATTTTGAAAGTACAATGGGTGGAAGTTACATGGAAATAGGGCAACATAATGAAAATCAAGGATGGTCTATTAGCAATACTGGGCTAATTTGTGATCATCAAAACAACTCTGGGGCCAACACTAATGAAGCTGCTATGGGGAGATTCGATGCAAACTTTGTTGGCAATTATAATGGAAATAACTTGAATTCTGGATTGCCTACTCATGGAAACTTTGCTAGTAGCGGTGAATTTGGAAGTGATACTCAAGTGCCTACATCATTTGGAGGAAATTTTTCTTGA 2187 0.3973 MKVTKRKVSLKLIENLKVRKCCYKKRTLGLLRKIKELSILCGIPTCSAIYGPGDTKPKIWPSPKVAKQLLKRLEEVPKGVKSRKVVTQLSFMRDKTKKLENQLARLKERNNEKDMSILMHQIHHDGKSLSDFEPSDLKCLLGYVEQKLNKVRMRTKHFKEELPPNPPPPPPVSCPQENEVLEKQSFLDLVKDTNQVNSGFDDNNVGSSSIGLPPPPPHANLSDVDMVFPQENSGGFNNVSDLGVFPPTNFGDLIGESDIGSEVFPLSDFGGSIGKSHSGLGAFPLENFRNLNGESDHLGLEVLPPQANFEGLNGENDLWFLPQGNFEGFNGENDSWLLPQGYFGGLNGESDEDNYKGLNVGSDSGVLPQGTFGGLNGESDEDNYGSLNVGSDSGVLPQGNFRGLNGESDEGNYGSLNVGSDLGVLPQGNFGSLNGESDEGNYGGLNVGSDSGVLPQGNFGGLSGESDEDNYGSLNVGCDLGVLPQGNFGGLIGESDEGNYEGLNVGSDSGVLPQDNFGGLNGESDLGILLEDNFEGLNGERGDSSQAWPESNFGDLNDRSDLLEMYNFKGLNSESGDSSRVLPEGNFGDLNDGSDLVKMYIEGNFEGLNGESNSGILNGSSTDEIGGSNIWPSYGHFESTMGGSYMEIGQHNENQGWSISNTGLICDHQNNSGANTNEAAMGRFDANFVGNYNGNNLNSGLPTHGNFASSGEFGSDTQVPTSFGGNFS. 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04920 728 MobiDBLite consensus disorder prediction 370 392 - -
Seca2g04920 728 SUPERFAMILY SRF-like 5 97 IPR036879 GO:0003677|GO:0046983
Seca2g04920 728 MobiDBLite consensus disorder prediction 429 449 - -
Seca2g04920 728 PANTHER SERUM RESPONSE FACTOR HOMOLOG 6 181 - -
Seca2g04920 728 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 53 IPR002100 GO:0003677|GO:0046983
Seca2g04920 728 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Seca2g04920 728 MobiDBLite consensus disorder prediction 708 728 - -
Seca2g04920 728 ProSiteProfiles MADS-box domain profile. 3 42 IPR002100 GO:0003677|GO:0046983
Seca2g04920 728 Coils Coil 89 116 - -
Seca2g04920 728 Gene3D - 17 113 IPR036879 GO:0003677|GO:0046983
Seca2g04920 728 CDD MADS_SRF_like 4 86 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04920 Seca-Chr2 135809773 135811959 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04920 3 169 Type I MADS-box Gene Family AT2G40210 33.533 1.80e-22 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca2g04920 SRF-TF 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04920 - - gmx:106798339 211.075