Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04918 ATGGAAACAACTAAAAACACCCTCCCCCCTCCTCCTCCTCCTCCCCCTCCCCCTCCTCCTCAAACTCTCCCTACCCTCCCTCCTCCTCCTCCTCCTCAAACTCTTTCTCCTGCTCCTCAAACTAAAGCAAACAAAGTCCCAACAAAAAGGAAGGCGTCACTAAAACTGATTGAGAATTTGAAAGTACGAAAATGTTGTTACAAAAAAAGAACTGGAGGGTTATTAAGGAAGATAGAGAAGCTTTCCATACTTTGTAGTAACCCTACATGCTCAGTCATCTCTGCTCCAGGTGACACTGAGCCTAAAATATGTCCATCCCCTCAAGTGGCTAAAAACCTACTACAAAGGCTTGAGGAAGTTTCAAAGGGTGTTAAGTCCAGAAACGTGGTTACCCAATTGTCTTTTGTGCGTGATAAGACAAAAAAGTTAGAAAACCAAGTTGCCAGACTCAAGGAGAGGAACAATGAGAAAGAAATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAGCCTAGTGATTTGAAGTGCTTACTTGGTTACGTGAAGCAAAAACTGAATGAAGTTAGAATGAGAACCAATCATTTTAAGCAGCTGTTGCCTCCTAATCCCCCTCCACCACCACCACCAGTGTCTTGTCCTCAAGAGAATGAGGTCCTAGAGAAACAATCATCCTTAGATTTGGTGAAAGAGGTTGATCAATTGAATAGTGGTTTTGATAATGATAATAATATAGGTAGTAGCAGCATGGGGCTACCACCACCACATGCAAATCTTAGTAATGTTGATATGGTGTTGCCCCAAGAGAATTTTGGAGGTTTCAATAATGTAAGTGATTTAGGGGTGTTTCCTCCAAGAAATTTTGGAGATCTTATTGGTGAAAGTGACCTAGGGTCAGAGGTGTTCTCTCCTAGTGATTTTGGAGGTCTCATTATTGAGAGTGACTCAGGGTTAGGGGCATTTCATCTAGAGAATTTTGGAGGTCTCATTGGTGAAAGTGATGAAGGCAATTTTGAAGGTCTCAATGGTGAAAGTGATGAAGGTAATTTTGAAGGTCTCAATGTTGGAAGTGACTCAGGGGTGTTACCTCAAGACAATGGTGATTTAGGAATGTTGCTTGAAGGTCTCAATGATGTAAGTGATTTAGGAATGTTGCTTAAAGACAAACTTGAAAGTCTCAATGGTGAAAGGGGTGATAGTTCACAGGTGTGGCCTGAAGGAAATTTTGGAGATCTCAATGATGAAAGTGATCTCTTAGAGATGTATAATTTTGAAGGTCTCAATGGTGAAAGTGGTGATAGTTCACAGGTGTTTCCTGAAGGCAATTTTGGAGATCTCAATGATGGAAGTGATCTCTTAAAGATGTTGTTTGAAGGTAATTTTGAAGGTCTCAATGGTGAAAGTAATTCAGGGCTTCTGAATGGAAGCTCTACTGATGAAATTGGAGGCAATAACATATGGCCATCTTATGGACATTTTGAAAGTACAATTGATGGAAGTTACATGGAAAAAGAGCAACTTAATGAAAATCAAGGAGGGTTTATTAACAACTCTGGAGCCAACACTCAAGAAGCTGCTATGGGGAGATTCGATGTAAACTTTGTTGGCAATAACAATGGAAATAACTTGAATTTTGGATTGCCTACTAATGGAAATTTTGCTAGTAGCGGTGAATTTGGAAGTGATACTCAAGTGTCTACATCATTTCGAGGAAATTTTCCTTGA 1743 0.3993 METTKNTLPPPPPPPPPPPPQTLPTLPPPPPPQTLSPAPQTKANKVPTKRKASLKLIENLKVRKCCYKKRTGGLLRKIEKLSILCSNPTCSVISAPGDTEPKICPSPQVAKNLLQRLEEVSKGVKSRNVVTQLSFVRDKTKKLENQVARLKERNNEKEMSILMHQIHHDGKSLSDFEPSDLKCLLGYVKQKLNEVRMRTNHFKQLLPPNPPPPPPPVSCPQENEVLEKQSSLDLVKEVDQLNSGFDNDNNIGSSSMGLPPPHANLSNVDMVLPQENFGGFNNVSDLGVFPPRNFGDLIGESDLGSEVFSPSDFGGLIIESDSGLGAFHLENFGGLIGESDEGNFEGLNGESDEGNFEGLNVGSDSGVLPQDNGDLGMLLEGLNDVSDLGMLLKDKLESLNGERGDSSQVWPEGNFGDLNDESDLLEMYNFEGLNGESGDSSQVFPEGNFGDLNDGSDLLKMLFEGNFEGLNGESNSGLLNGSSTDEIGGNNIWPSYGHFESTIDGSYMEKEQLNENQGGFINNSGANTQEAAMGRFDVNFVGNNNGNNLNFGLPTNGNFASSGEFGSDTQVSTSFRGNFP. 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04918 580 MobiDBLite consensus disorder prediction 1 37 - -
Seca2g04918 580 ProSiteProfiles MADS-box domain profile. 47 93 IPR002100 GO:0003677|GO:0046983
Seca2g04918 580 Gene3D - 61 168 IPR036879 GO:0003677|GO:0046983
Seca2g04918 580 MobiDBLite consensus disorder prediction 202 221 - -
Seca2g04918 580 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 57 95 IPR002100 GO:0003677|GO:0046983
Seca2g04918 580 SUPERFAMILY SRF-like 49 141 IPR036879 GO:0003677|GO:0046983
Seca2g04918 580 MobiDBLite consensus disorder prediction 205 220 - -
Seca2g04918 580 SMART madsneu2 47 106 IPR002100 GO:0003677|GO:0046983
Seca2g04918 580 MobiDBLite consensus disorder prediction 1 50 - -
Seca2g04918 580 Coils Coil 133 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04918 Seca-Chr2 135780796 135782538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04918 48 215 Type I MADS-box Gene Family AT2G40210 30.357 2.93e-17 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca2g04918 SRF-TF 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04918 - - gmx:106798339 198.749