Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04917 ATGGCGATGCCAACAGTTTATCTTAAAGAACATGAAGGAATTGCACACAATTTTGTGGGGCAGTTATCATCTGCAACTTCAGCACCCTGGTGGAGTGCTGCTTTTGGATCTCAATCTGTTTATGGAGAGTCCTGTGGCCAAATGAAACCCTTTTCATTGGAGCCACCTACCTGTGTAGACCAACTTGCTGCCAGTAAGCAATCTAACAGAGGAGCTGAACAAGTGTTGGGTAAAGGACATCCAACTCAATTTACCATCTTTCCAGATGATTGTGAAGTGTCAGGTGATGCACAAAAGCCTCACACAACCATATCACTGCAGTCATCACTCACTGATAATACCCGCACTCGTTTTGAACTTGGATTTAGTCAGCCTATGGTCTGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAACTTATGGACCTCAACTTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTATGTGAATGCAAAGCAGTACCATGGAATCATTAGACGTCGCCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGATTAAACGTCGCAAGCCCTATATGCATGAGTCACGCCATCTCCATGCACTGCGCCGACCAAGAGGGAGTGGTGGTCGCTTCTTGAACTCAAAGAATTCTGCTAATGGGAATGGCAAAAGTGGCAGTGAAATTAAAAAAACTGGTGGTGAACAACTGCACTCCAGTGGCTCTCAGAGTTCTGAAGTTCTTCAATCTCAGGTTGGAACTTTAAACTCATCAAAAGATACTAATGGTAGCAGTCCAAATATTTCTGGTTCAGAGGTGACTAGCATGTATTCAAGGGGAGCTCTTGCTCTTGATAGCTTTGCTGTCAATCATCTTGGAGCTGCTGTTCACTCTCTGGCAGACATGATTAATGGTGGGCGTGGCATCACCAAATGGGTTACAGCAGCAGATAACTGCTGTAACCTTAAAGTTTGA 993 0.4401 MAMPTVYLKEHEGIAHNFVGQLSSATSAPWWSAAFGSQSVYGESCGQMKPFSLEPPTCVDQLAASKQSNRGAEQVLGKGHPTQFTIFPDDCEVSGDAQKPHTTISLQSSLTDNTRTRFELGFSQPMVCAKYPYTDQFYGLFSTYGPQLSGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDHKLIKRRKPYMHESRHLHALRRPRGSGGRFLNSKNSANGNGKSGSEIKKTGGEQLHSSGSQSSEVLQSQVGTLNSSKDTNGSSPNISGSEVTSMYSRGALALDSFAVNHLGAAVHSLADMINGGRGITKWVTAADNCCNLKV. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04917 330 PRINTS CCAAT-binding transcription factor subunit B signature 195 218 IPR001289 GO:0003700|GO:0006355
Seca2g04917 330 PRINTS CCAAT-binding transcription factor subunit B signature 164 186 IPR001289 GO:0003700|GO:0006355
Seca2g04917 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 64 284 IPR001289 GO:0003700|GO:0006355
Seca2g04917 330 MobiDBLite consensus disorder prediction 217 277 - -
Seca2g04917 330 MobiDBLite consensus disorder prediction 198 277 - -
Seca2g04917 330 Gene3D - 161 223 - -
Seca2g04917 330 SMART cbf3 160 221 IPR001289 GO:0003700|GO:0006355
Seca2g04917 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 218 IPR001289 GO:0003700|GO:0006355
Seca2g04917 330 ProSiteProfiles NF-YA/HAP2 family profile. 161 221 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04917 Seca-Chr2 135732815 135739700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04917 22 330 CCAAT-HAP2 Transcription Factor Family AT3G05690 45.593 1.86e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca2g04917 CBFB_NFYA 7.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04917 K08064 - gmx:100815382 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05053 8 140147209 140151336 Seca2g04917 2 135732815 135739700 PCT