Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04916 ATGGCTGCTACACCCTCTGTTTCCACTTCTATCTCCAATAGAATCTACAACCTCTCCTTCACCCACTCTTCCCTTTCACTCACCAGCAACTTCCCTCAAAGACCCATATCCCACAAACCCCTCAATCTCAACCTCAAGTCCCAAAGTTTCAATCTTTCCCCTCTCCCACTTCACCGTCTTCACCCGCCATGCGCTGCCTCCGATGAATTCGAAGTGTCTGAAGACAGCGACCCAGAATCAGAACCAGAACCAGAAACCTCTGATGAACCACAACAAGAAGAGGAACAGCAGAAGGTATCAAACGTAAACGATGCTGGAAGGCTCTATGTTGGAAACTTACCATATTCAATGACTTCTTCCCAATTGTCCGAGATCTTTGGAGAAGCTGGCACTTTGGTGTCTGTTGAGGTAGTATACGATCGAGTCACAGATAGGAGCAGAGGATTTGCATTTGTTACAATGGGGACTGTTGAGGAGGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTGCTAATGTTAATGACTGTGATGATGTACAGCAAGTTGGTGGTAGGGCCATTAAGGTAAACTTCCCAGAGGTGCCGAGAGGAGGTGAAAGGTTAGTAATGGGGCCAAAAATACGGAATAACTATAGAGGCTTTGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGGACTGACCTCTCAGGATCTTAGAGATGTTTTTGCTGAGCAGCCAGGCTTATTGAGTGCCAAGGTCATCTATGAGAGGGATAGTGGAAGATCTCGAGGTTTTGGATTTGTCACTTTTGAAACTGCTGAGGATGTAGAGGCTGCTTTGAATGTTATGAATGGTGTGGAGGTTCAAGGTCGGCCCTTGAGATTGAATTTAGCTGCAGAGAGGACACCATCTTCTCCAGTAGTTAAGCAAAATAGAGAAAGTAATGTTGATAGCTCAGAATTGCTATCTAGTGCCAGCACATGA 975 0.4564 MAATPSVSTSISNRIYNLSFTHSSLSLTSNFPQRPISHKPLNLNLKSQSFNLSPLPLHRLHPPCAASDEFEVSEDSDPESEPEPETSDEPQQEEEQQKVSNVNDAGRLYVGNLPYSMTSSQLSEIFGEAGTLVSVEVVYDRVTDRSRGFAFVTMGTVEEAKEAIRMFDGSANVNDCDDVQQVGGRAIKVNFPEVPRGGERLVMGPKIRNNYRGFVDSPHKIYAGNLGWGLTSQDLRDVFAEQPGLLSAKVIYERDSGRSRGFGFVTFETAEDVEAALNVMNGVEVQGRPLRLNLAAERTPSSPVVKQNRESNVDSSELLSSAST. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04916 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 IPR000504 GO:0003723
Seca2g04916 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 291 IPR000504 GO:0003723
Seca2g04916 324 Gene3D - 204 310 IPR012677 -
Seca2g04916 324 MobiDBLite consensus disorder prediction 300 324 - -
Seca2g04916 324 SUPERFAMILY RNA-binding domain, RBD 103 192 IPR035979 GO:0003676
Seca2g04916 324 CDD RRM2_NsCP33_like 220 295 - -
Seca2g04916 324 MobiDBLite consensus disorder prediction 68 103 - -
Seca2g04916 324 MobiDBLite consensus disorder prediction 299 324 - -
Seca2g04916 324 PANTHER OS02G0815200 PROTEIN 42 299 - -
Seca2g04916 324 FunFam 33 kDa ribonucleoprotein, chloroplastic 201 305 - -
Seca2g04916 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 194 IPR000504 GO:0003723
Seca2g04916 324 SMART rrm1_1 107 190 IPR000504 GO:0003723
Seca2g04916 324 SMART rrm1_1 220 293 IPR000504 GO:0003723
Seca2g04916 324 Gene3D - 65 198 IPR012677 -
Seca2g04916 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
Seca2g04916 324 MobiDBLite consensus disorder prediction 70 90 - -
Seca2g04916 324 SUPERFAMILY RNA-binding domain, RBD 216 307 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04916 Seca-Chr2 135729296 135732009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04916 108 312 Eukaryotic Initiation Factors Gene Family AT3G16380 30.244 1.12e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04916 - - gmx:100814852 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04916 2 135729296 135732009 Seca8g04381 8 125065177 125068367 PCT