Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04915 ATGAACGACTTACTCTCCGACAAGAACAACCACCAACACGTCATCCAGATGGCGGAGGCTACCACCGCGGCCACCAGCCTCGACAAATTCTTCCAGGAAGTGGAGTCCGTTAAGGAGGATCTGAACGAACTGCAACGGCTCCACCTCAGCCTCCGCACCTCCAACGAACAGAGCAAGACCGTTCATACCGCAAAGGCCGTTAAGGACCTTCGCTCTCGCATGGACGCTGACGTGTCACTCTCTCTCAGGAAAGCTAAGGTCATCAAGGCTCGCTTGGACGCACTCGACCGTTCCAACGAAGCTAGCCGCTCCTTACCTGATTGCAGACCCGGTTCATCCTCCGACCGAACCCGCTCCTCCGTCGTGAGCGGTTTGAGGAAGAATCTCAAAGACTCCATGGACAGTTTCAATTCCCTGAGGGAGCAGATATCATCAGAGTATAGAGATACCGTGCAACGTAGATATTACACTGTCACCGGCGAGAATCCTGATGATAAAACCATTGACCTCCTCATCTCTACTGGTGAGAGTGAAACTTTCTTACAGAAAGCCATTCAACAGCAAGGGAGAGCCACCATAATGGACACTATCCAAGAGATTCAAGAGAGGCATGGGGCGATGAAGGAGATAGAGAGAAATCTAAATGAGCTGCACCAAGTGTTCTTGGACATGGCAGTGTTGGTCCAAACACAGGGTGAACAGTTGGATGACATAGAGAGCCACATGGCGCGAGCAAATTCTTATGTGAGGGGCATGGCAGCTATTCGAATGATAGATATAGCGGTCAACTTCACAGATGGAATGTTTAAGGGAATCTACAACGGCAAGCAATGTCACATCGCAGATATACCAACCGTTTTGAACAGGGCTTGGGCTGCTGGCGTCCACCGAATTATCGTAACTGGTGGGTCCCTTGAGGAATCAAGGGAGGCACTTGCAATTGCAGAAACAGATGGACGACTTTTCTGTACTGTCGGTGTGCATCCAACACGCTGCAAGGAATTTGAGGAGAGTGGAGATCCAGAAAAGCATTTTCAGGCTCTTTTGTCGTTGGCCAAAGAGGGAATTCAGAAAGGAAAGGTGGTTGCAATTGGAGAATGTGGATTGGACTATGACCGGCTTCATTTTTGCCCAGCAGAGATTCAAAAGAAGTATTTCGAGAAACAATTTGAATTAGCATATACCACAAAACTGCCTATGTTTTTGCACATGCGAGCAGCAGCTGCAGATTTCTGTGAAATTGTTGAGAAAAATAAGGACAGGTTCACTTCTGGAGTTGCCCATTCATTTACTGGTAGTAAGGATGATTGCACTAAGCTTCTCTCATTTGATAAAATGTACATTGGCATAAATGGATGCTCTCTGAAGACAGCTGAGAACCTTGATGTTGTGAAGGATATTCCTGTTGAGAGAATGATGATTGAGACAGACTCACCATACTGTGAAATAAAAAATACTCATGCAGGAATTGGTTTTGTTAAATCTACATGGCCTTCTAAGAAGAAAGAGAAGTATGATCAAGAGTGCATTGTCAAGGGCCGCAATGAACCTTGTTTAGTTAGGCAAGTTCTTGAGGTGGTTGCTGGCTGTAAAGGCATCAATGATGTGGGTAACCTCAGCTCAACATTGTACCACAACACTTGCAGGGTTTTTTTCCCACATGATTTGGATTCTGCGGCTGATGCCCTTCTAGCTGGAATCAATTCTTCATAA 1713 0.4647 MNDLLSDKNNHQHVIQMAEATTAATSLDKFFQEVESVKEDLNELQRLHLSLRTSNEQSKTVHTAKAVKDLRSRMDADVSLSLRKAKVIKARLDALDRSNEASRSLPDCRPGSSSDRTRSSVVSGLRKNLKDSMDSFNSLREQISSEYRDTVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRATIMDTIQEIQERHGAMKEIERNLNELHQVFLDMAVLVQTQGEQLDDIESHMARANSYVRGMAAIRMIDIAVNFTDGMFKGIYNGKQCHIADIPTVLNRAWAAGVHRIIVTGGSLEESREALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIQKGKVVAIGECGLDYDRLHFCPAEIQKKYFEKQFELAYTTKLPMFLHMRAAAADFCEIVEKNKDRFTSGVAHSFTGSKDDCTKLLSFDKMYIGINGCSLKTAENLDVVKDIPVERMMIETDSPYCEIKNTHAGIGFVKSTWPSKKKEKYDQECIVKGRNEPCLVRQVLEVVAGCKGINDVGNLSSTLYHNTCRVFFPHDLDSAADALLAGINSS. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04915 570 CDD TatD_DNAse 257 552 IPR001130 GO:0016788
Seca2g04915 570 CDD SynN 27 184 IPR006011 GO:0016020
Seca2g04915 570 MobiDBLite consensus disorder prediction 99 123 - -
Seca2g04915 570 Gene3D - 248 557 - -
Seca2g04915 570 Gene3D - 25 247 - -
Seca2g04915 570 MobiDBLite consensus disorder prediction 105 123 - -
Seca2g04915 570 SMART tSNARE_6 192 258 IPR000727 -
Seca2g04915 570 CDD SNARE_syntaxin1-like 196 249 - -
Seca2g04915 570 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 197 250 IPR000727 -
Seca2g04915 570 FunFam Putative tatD related deoxyribonuclease 252 558 - -
Seca2g04915 570 Pfam Syntaxin 29 232 IPR006011 GO:0016020
Seca2g04915 570 SUPERFAMILY Metallo-dependent hydrolases 257 552 IPR032466 -
Seca2g04915 570 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 256 557 - -
Seca2g04915 570 Pfam TatD related DNase 259 551 IPR001130 GO:0016788
Seca2g04915 570 SUPERFAMILY t-snare proteins 26 250 IPR010989 GO:0016020|GO:0016192
Seca2g04915 570 Coils Coil 27 47 - -
Seca2g04915 570 ProSitePatterns Syntaxin / epimorphin family signature. 203 242 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca2g04915 570 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 24 154 - -
Seca2g04915 570 SMART SynN_4 22 148 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04915 Seca-Chr2 135716104 135729065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04915 20 251 SNARE and Associated Proteins AT3G11820 70.690 1.67e-114 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04915 K03424 - gmx:100814321 607.06