Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04913 ATGGATGAGATTGATGTTCCTTCATACTTTCTCTGCCCAATTTCATTAGAAATCATGAAAGATCCAGTTACTGTCTACACGGGGATCACCTATGACAGAGAGAGTATTGAAAAGTGGCTATTTTCTAAGAACAACAACACATGCCCTGTCACAAAACAACCACTCTCAGATTGCACTGATCTAACCCCAAACCACACCCTTCGACGACTCATTCAAGCATGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATTCCAACTCCAAAGCCACCAATCAACAAATACCAAATTTCAAAGCTTCTCAAAGACGCTTCCCATTCTCCCCTGATGCAAATCAAATGTCTCCGAAGGCTTAAATCCATCGCTTCTGGAAGTGAAACAAACAAACGTTGCATGGAAGCAGCTGGTGCTGTTGAATTCTTAGCCTCAATTGTAATGAACAACATCGATTCTTCTGAATTAGAGGCTAACCCAGAAGACGAAGCCTTAAGCATTCTCCATAACCTCCATCTATCTGAAACAGGGTTGAAGACTCTGCTAGGCTTCAAAAACGGAGACTTTATCAACACCTTAACAAGGGTTATGCAAAAGGGGTTCTTTGAATCACGAGCTTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTGGCTGATCCAGTGCATTTATTCCATCTAAGAACTGAATTGTTTGTTGAATTAGTGGAAATTCTGAAGGATCAGATTTCCTTAAAGGCATCAAAAGCGACACTACAGACCCTGATTCAACTCTGTCCTTGGGGGAGAAACAGGATCAAAGCAGTGGAAGCAGGTGCTGTTCCTGTTTTGATAGAACTTCTTCTTGATTGTAAAGAAAGAAAGCCTTGTGAAATGATGATGGTGTTGTTGGAGTCTATGTGTCAATGTGCTGAGGGAAGAGCAGAACTTTTGAGTCATGGAGCAGGGCTTGCTATTGTGTCAAAGAAGATTCTGAGGGTTTCTACAGTGGCAAATCATAGGGCTGTGAGGATTTTGCTTTCTATCTCGAAATTCTCTGCAACACCAAATGTTCTTCAAGAAATGTTGAAACTTGGTGTGGTGGCAAAACTGTGTTTGGTGCTTCAAGTGGATAGTGGAAGTAAGGCTAAGGAGAAAGCAAGAGAGATACTCAAATTGCATGGTCGGACATGGAGGGAATCTCCATGCATACCTAACAATTTGCTTTCTTCCTACCCAGCTTGTATGTGA 1227 0.4189 MDEIDVPSYFLCPISLEIMKDPVTVYTGITYDRESIEKWLFSKNNNTCPVTKQPLSDCTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPINKYQISKLLKDASHSPLMQIKCLRRLKSIASGSETNKRCMEAAGAVEFLASIVMNNIDSSELEANPEDEALSILHNLHLSETGLKTLLGFKNGDFINTLTRVMQKGFFESRAYAVFLLKSMSEVADPVHLFHLRTELFVELVEILKDQISLKASKATLQTLIQLCPWGRNRIKAVEAGAVPVLIELLLDCKERKPCEMMMVLLESMCQCAEGRAELLSHGAGLAIVSKKILRVSTVANHRAVRILLSISKFSATPNVLQEMLKLGVVAKLCLVLQVDSGSKAKEKAREILKLHGRTWRESPCIPNNLLSSYPACM. 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04913 408 SUPERFAMILY ARM repeat 99 381 IPR016024 -
Seca2g04913 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Seca2g04913 408 Gene3D - 96 389 IPR011989 -
Seca2g04913 408 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Seca2g04913 408 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Seca2g04913 408 CDD RING-Ubox_PUB 7 57 IPR045210 -
Seca2g04913 408 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Seca2g04913 408 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Seca2g04913 408 SUPERFAMILY RING/U-box 3 82 - -
Seca2g04913 408 PANTHER WDSAM1 PROTEIN 3 397 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04913 Seca-Chr2 135671973 135673199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04913 1 406 U-box Gene Family AT3G52450 60.092 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04913 - - gmx:100811258 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04913 2 135671973 135673199 Seca2g04913 2 135671973 135673199 ECH
Seca2g04913 2 135671973 135673199 Seca8g05062 8 140264207 140265496 PCT