Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04912 ATGGATGAAATTGAAGTTCCTCAGTATTTCATCTGCCCTATATCCTTTGAAATCATGAAAGATCCAGTAACTACTATAACAGGCATCACATACGACCGTCATAGCATTGAAAATTGGCTATTCACCAACAACAACACCACTTGCCCTGTCACCAGGCATCTTCTCCCTATAGACTCTGACTTAATCCCTAATCACACCCTTCTCCGCCTAATCCAATTTTGGTGCACCCAAAATGCTTCTCAAGGCATTGATCGAATTCCCACACCTAAGCCACCCCTTAACAAATTTCAAGTCCTCAAACTCCTCAAACACCTCATGGACCCTCACCTTCAGCTCAGAAAGATAAGGGAATTGGAATTGCTTGCGGCAGAGAATGAGAGAAATAGAAAGTGCTTATTACAAGCTGGTGTGCCAAAAGCCATGGTCCTCTTCATATTGACTTGTTTTAGAAAAAATCAAACTGATAATGGTCTTGAAGAAGCTCTGAGTATATTGCAATTTGTTAATGTTCCAGAAGAGGAAATAAAGATGCTTGTAGAAGAAAATGATCAAATATTGGATTCTCTAACATGGGTTTTAGGTTGTGATGAAGTGGGAAATTCTGTTACAGTGAAATCCCATGCAGTTTTAGTGCTCAAAACACTCATTCAGAATGCTGGAAACAGAGTTATGGAGAGACTTAAACCTGAATTGTTTGAAAGTATTGTGAAGGTTCTCCGATGTGGGACTACAAAACAAGGCATGAAAGCTGCCCTTCATGTGTTGTTAAGCGCTTGTCCTTGGGGAAGGAATCGGATCATGATGGTGGAAAGTGGTGCAGTGTTTGAACTCGTAGAGATTGAAATGGGGACACCTGAAAAGAGAACAACAGAGATAATCATGGGGATATTGTCTCAATTGTGTTCTTGTGCTAATGGCAGGGCTCAGTTTCTGAGTCACAAAGGTGCCATTGCCGTTTTGACAGAGCGAATCTTGAAAGTTTTGCCGGCAGTGGATGACAGAGTAATATTTATTCTTTCATTGGTGTCTATGTTCTGTGGCACATGGGTGGTGCTTTAG 1059 0.4117 MDEIEVPQYFICPISFEIMKDPVTTITGITYDRHSIENWLFTNNNTTCPVTRHLLPIDSDLIPNHTLLRLIQFWCTQNASQGIDRIPTPKPPLNKFQVLKLLKHLMDPHLQLRKIRELELLAAENERNRKCLLQAGVPKAMVLFILTCFRKNQTDNGLEEALSILQFVNVPEEEIKMLVEENDQILDSLTWVLGCDEVGNSVTVKSHAVLVLKTLIQNAGNRVMERLKPELFESIVKVLRCGTTKQGMKAALHVLLSACPWGRNRIMMVESGAVFELVEIEMGTPEKRTTEIIMGILSQLCSCANGRAQFLSHKGAIAVLTERILKVLPAVDDRVIFILSLVSMFCGTWVVL. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04912 352 Coils Coil 115 135 - -
Seca2g04912 352 SUPERFAMILY ARM repeat 99 322 IPR016024 -
Seca2g04912 352 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Seca2g04912 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Seca2g04912 352 CDD RING-Ubox_WDSUB1-like 7 64 - -
Seca2g04912 352 Gene3D - 96 342 IPR011989 -
Seca2g04912 352 PANTHER WDSAM1 PROTEIN 3 344 IPR045185 GO:0061630
Seca2g04912 352 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Seca2g04912 352 SUPERFAMILY RING/U-box 3 84 - -
Seca2g04912 352 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04912 Seca-Chr2 135661366 135662424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04912 2 345 U-box Gene Family AT3G11840 40.722 8.95e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04912 - - qsu:112012820 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04912 2 135661366 135662424 Seca2g04912 2 135661366 135662424 ECH
Seca8g05062 8 140264207 140265496 Seca2g04912 2 135661366 135662424 PCT