Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04910 ATGGCGACATACTTTCATGGTAACTCCGAAATCCAATCTGCTGGCGGCGCTGATGGACTGCAAACTCTTGTTCTCATGAATCCTGGCTATATCCACTACTCAGACAACGCGCCGCCGCAGCAACCACCGTCTCACACCGCCGCCGGTAATTTTGTCTTTCTCAACCCTGCTGCTGCTGCTACCAGTAACAACTCCTTCAGTCCCCACGCACCACCTGCTCACACCCAACAATTCGTTGGCATCCCTCTCCCTGCTTCCTCTCAAGACCTTAACCACCAACACTCCATGCAAGGCCCCCATGACGTCCCTGCCATGCATGGCTTCCTCCCCCGCATGCAGTACAATCTCTGGAACACAATTGACCCCAATTCGGCGGCGCGTGACACTCCACGCGCTCAGCAGGGGTTGTCTCTGAGCCTCTCTTCCCAGCAAGCTCGGATGGGGTCTTTCCGTGAAGGTCAAGCGCCGGCCATGTCTGGTGGTGGTGGGTCACCGTCCTCAGCTTCTGGGGTTACTACTAACAATGGAGGAGCTTCTGGGATTCAGAGTGTGTTTCTGAGCTCAAAGTATTTGAAGGCAGCACATGAGCTTCTAGAAGAAGTGGTGAATGTTAACAATGGGATTAGCACTGAATTGACAAAAAAGAGTACTATTGGTGGGCAAACCAATAAGGTGATTGGTGAGTCATCAACAGCAGCTAGTGGAGATGGTTCAATTGGTGGGGAAGGAAGTGGGAAACGTAGCTCAGAGTTATCAACAGCTGAAAGACAAGAAATTCAGATGAAGAAAGCAAAGCTCATCAGCATGCTTGATGAGGTGGAGCAAAGGTACAGACAGTACCATCATCAAATGGAGATTGTGGTTTCTTCATTTGAACAAGCTGCAGGGATTGGTTCAGGTAGAACTTACACTGCACTTGCACTTCAAACAATCTCTAAGCAGTTTCGGTGTTTGAAAGATGCTATAGCTGGTCAAATTAAAGCTGCAAATAAGAGCTTAGGGGAAGATGATTGCTTTGGTGGAGGGAAAATTGAAGGTTCAAGGCTTAAATATGTAGATCATCATCTAAGGCAACAGAGAGCTCTCCAACAATTGGGAATGATCCAGCATAATGCTTGGAGACCCCAGAGAGGTTTGCCTGAAAGATCAGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCAGACAAGCACATGCTTGCAAAACAAACAGGACTTACTAGGAGTCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCCATGGTGGAAGAAATGTACTTGGAGGAGATGAAAGATCAGGAACATAATGGGTCTGAGAATAAATCAAGCAAGAGTAATGATGATTCTTCTATGAAAATGACAACCCCTCAAGAGAAAGGTCCTACATCTGAAACTGAAGCTAAGAGTTTCACTTCCAAACAAGATGTTTCTAAAGGCCAGGACACTCCAATGGTTTCAGTTTCTAGACCATCAACATCACCACTTGGAGGAAATGTTAGACACCAATCAGGATTCAGCTTCATGGGGTCATCAGAACTAGAAGGGATCACACAAGGTAGTCCCAAGAAACCAAGGAACCATGAAATTATGCATTCCCCAAATAATGTCCCTTCTATTAACATGGATGTCAAGCCCAATGAGGTGAACAATGAGCAACTCACAATGAAATTTGGAGATGAGAGGCAGAGCAGAGATGGGTACTCTTTTATGGGAAATCAAACAAATTTCATTGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGTAGGTTTGATGCAGAGCAATTCACACCAAGGTTTTCAGGTAATGGGGTATCTCTCACTCTTGGTCTTGACTCATTACCAGGAACCCATCAAACATTTCTCCCAAATCAGAACATTCAACTTGGAAGAAGCCTTGACATCAGTGAACCAAACGAGTTTGGTGCCATAAACACTTCCTCTCCTCACTCTACAGCTGCTTATGAGAGTATCAGCATGCAAAATCCAAAGAGGTTTGCTGCTCAATTGTTGCCAGACTTTGTGGCCTAA 2070 0.458 MATYFHGNSEIQSAGGADGLQTLVLMNPGYIHYSDNAPPQQPPSHTAAGNFVFLNPAAAATSNNSFSPHAPPAHTQQFVGIPLPASSQDLNHQHSMQGPHDVPAMHGFLPRMQYNLWNTIDPNSAARDTPRAQQGLSLSLSSQQARMGSFREGQAPAMSGGGGSPSSASGVTTNNGGASGIQSVFLSSKYLKAAHELLEEVVNVNNGISTELTKKSTIGGQTNKVIGESSTAASGDGSIGGEGSGKRSSELSTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMEIVVSSFEQAAGIGSGRTYTALALQTISKQFRCLKDAIAGQIKAANKSLGEDDCFGGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDQEHNGSENKSSKSNDDSSMKMTTPQEKGPTSETEAKSFTSKQDVSKGQDTPMVSVSRPSTSPLGGNVRHQSGFSFMGSSELEGITQGSPKKPRNHEIMHSPNNVPSINMDVKPNEVNNEQLTMKFGDERQSRDGYSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDISEPNEFGAINTSSPHSTAAYESISMQNPKRFAAQLLPDFVA. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04910 689 ProSiteProfiles 'Homeobox' domain profile. 370 433 IPR001356 GO:0003677
Seca2g04910 689 MobiDBLite consensus disorder prediction 443 459 - -
Seca2g04910 689 Gene3D - 376 455 - -
Seca2g04910 689 SMART prehox3 179 324 IPR006563 -
Seca2g04910 689 MobiDBLite consensus disorder prediction 460 518 - -
Seca2g04910 689 MobiDBLite consensus disorder prediction 223 255 - -
Seca2g04910 689 MobiDBLite consensus disorder prediction 443 518 - -
Seca2g04910 689 Coils Coil 256 276 - -
Seca2g04910 689 SUPERFAMILY Homeodomain-like 374 440 IPR009057 -
Seca2g04910 689 MobiDBLite consensus disorder prediction 125 174 - -
Seca2g04910 689 FunFam BEL1-like homeodomain protein 9 376 438 - -
Seca2g04910 689 MobiDBLite consensus disorder prediction 160 174 - -
Seca2g04910 689 SMART HOX_1 373 437 IPR001356 GO:0003677
Seca2g04910 689 MobiDBLite consensus disorder prediction 125 149 - -
Seca2g04910 689 CDD homeodomain 373 434 IPR001356 GO:0003677
Seca2g04910 689 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677|GO:0006355
Seca2g04910 689 MobiDBLite consensus disorder prediction 223 237 - -
Seca2g04910 689 Pfam Associated with HOX 186 323 IPR006563 -
Seca2g04910 689 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04910 Seca-Chr2 135644720 135648761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04910 1 689 Homeobox Transcription Factor Family AT2G35940 51.210 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca2g04910 POX 2.7e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04910 - - gmx:100810901 1084.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04910 2 135644720 135648761 Seca2g04910 2 135644720 135648761 ECH
Seca2g04910 2 135644720 135648761 Seca2g04910 2 135644720 135648761 PCT