Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04906 ATGGATGGCTCTTCTCGAACCTTCCTTTCCACTCTCCTCCTCCTGGTTACAACGGTGTTCGCCACCACTGACCCAAACGACCTGAAAATCCTCAACCAGTTCAGAAAAGGCTTGGACAACCCCGAATTGCTACCTTGGCCTGAAGAAGGGGGTGACCCATGTGGCATCCCAGGTTGGAAATACATCTTCTGCGACGGTGATAGAGTCTCACAGATTCAAACTAAGAACTTGAACCTCAGTGGCCCTTTACCTCAGAATCTGAACCAGCTAACCGAGCTCTTCAACTTGGGTCTCCAGAACAACAAGTTCAACGGTCCCTTGCCGTCGCTAAAAGGGTTGTCGAAGCTGAAATACGCGTTTTTGGACAACAATAACTTCGATTCCATCCCTCCTGATTTCTTCGAGGGGCTTGATAGCTTGGAGGTTCTGGCATTGGATAACAATGGCCTCAATGTTACCACTGGTGGGTGGCAATTTCCTTCTTCGTTGCAGGGTTCAACGCAATTAACCAACCTTTCTTGCATTAATTGCAATTTGGCGGGTCCTTTGCCGGATTTTCTGGGGAAGATGAACTCTCTGTCGTTTTTGAAGCTCTCCGGCAACGGTTTGACCGGCGAGATCCCGGTGAGTCTCAACGGGTCAGGGTCTATGCAGGTTCTGTGGTTGAATAACCAGAAGGGTGATGGTCTCACTGGGAATATTGACGTGGTGGCCACCATGACTTCACTCACGAGTTTGTGGCTTCATGGGAACAAGTTCACTGGGTCTATTCCGGAGAACATTGGGGATTTGGCTACTCTCAAGGTTCTTAACCTCAATGGCAACAACCTCGTTGGTCTAATCCCTGATGCATTAGGTAACATGGAATTGGACAACCTAAATTTGAACAATAACAGGTTCATGGGTCCGATCCCAAATTTTAAAGCATCTACAGTCTCTTATGATAACAATGATTTTTGTCAAAACAAAAGGGGGGTTCCCTGTGCCTTTGAAGTCATGGCGCTCCTGGGATTTCTTGGTGAGTTGAATTATCCTTCAAATCTAGTTGAATCCTGGACTGGTAATGACCCTTGTAAGGGGCTTTGGTTGGGAATAAAGTGCAATGCCAATGGAAAGGTGTCTTTGATTAATTTGCCACACTTTAATCTTAGTGGTACTTTAAGTCCTTCTGTTGCAAACTTAGGTTCTCTTGTTGAAATCAGATTGGGGGGTAACAAGCTTAGTGGTGTGGTACCTAGTAACTGGACTAGCTTGACGTCTTTGACATTGTTGGATCTGAGTGGCAATAACATTTCTCCTCCACTGCCTAAGTTTACTACTGGCTTGAAACCTGTGATTGATGGGAATCCTCTATTCAATGGTAACCCGGAAGCTCCTTCCTCAGGGAATAACAACCCATCAGCTGGATCTGGGAATGCTGAAAATACACCGGCACACTCGAATTCAAGTTCAACTGATTCTTTTGAATCAAAAAAGTCCAAGAGGAAAGGTTTGGTTTTGATTGTAGCCCCCATTGCAGGTGTGGCGGCTGCAGCTTTTCTGCTCATTCCACTTTATGTATATTGTTTCAGGAGGAGAAAGGATGGATACCAGGCTCCTAGTTCACTAGTAATTCACCCCAGAGATCCATCTGATTCAGATAGTACTGTGAAGATTGCTATTGCTAATAATACCAATGGAAGCATTTCCACTGTGACAGGGAGTGGGACTGGGAGCAGAAACAGCAGCGGAATTGGGGAGTCTCATGTCATTGAAGCTGGAAATCTTGTGATATCAGTTCAAGTTTTAAGAAATGTGACTAAGAATTTTGCTCCTGAGAATGAGCTTGGCCGCGGTGGATTTGGGGTTGTTTATAAGGGAGAGTTGGATGATGGGACTAAAATTGCAGTAAAACGAATGGAAGCAGGTGTGATTAGTAGTAAAGCCTTGGACGAATTCCAGGCTGAAATTGCAGTTCTATCAAAAGTCCGACATCGGCATCTAGTGTCACTTTTGGGTTATTCCATCGAAGGTAATGAGAGGATTCTAGTATATGAGTATATGCCACAAGGGGCTCTCAGTAAGCATCTTTTCCATTGGAAGAGCCTTGAATTGGAGCCTCTCTCTTGGAAGCGGAGGCTTAACATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTCCATACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGCCATCAAATATTTTGCTTGGTGATGATTTCAGAGCAAAAGTATCAGATTTTGGATTGGTAAAACTTGCTCCTGAAGGCGAAAAATCTGTAGTGACCCGGCTTGCTGGGACTTTTGGATACTTAGCTCCAGAATATGCAGTGACAGGAAAAATCACTACCAAAGCAGATGTTTTCAGTTTTGGAGTTGTGCTAATGGAGCTGTTGACTGGATTGATGGCACTTGATGAGGATAGACCTGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGCATATAAAATCAGATAAGAAAAAACTAATGGCTGCTATTGACCCAGTTCTTGACATAAAGGAAGAAACGTTTGAGAGCATTTCCATCATTGCTGAGCTAGCTGGGCACTGCACTGCCAGAGAACCAAGCCAAAGGCCAGAAATGGGTCATGCTGTGAATGTTCTGGCACCCCTTGTTGAAAAATGGAAACCATTTGATGATGACACGGAGGAGTATTCTGGCATCGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGCTGGCAGGAGGCAGAAGGAAAGGACTTAAGTTATATGGACCTAGAAGACAGTAAGAGTAGTATTCCTGCAAGGCCTACTGGGTTTGCAGATTCTTTTACTTCAGCTGATGGCCGGTGA 2850 0.4491 MDGSSRTFLSTLLLLVTTVFATTDPNDLKILNQFRKGLDNPELLPWPEEGGDPCGIPGWKYIFCDGDRVSQIQTKNLNLSGPLPQNLNQLTELFNLGLQNNKFNGPLPSLKGLSKLKYAFLDNNNFDSIPPDFFEGLDSLEVLALDNNGLNVTTGGWQFPSSLQGSTQLTNLSCINCNLAGPLPDFLGKMNSLSFLKLSGNGLTGEIPVSLNGSGSMQVLWLNNQKGDGLTGNIDVVATMTSLTSLWLHGNKFTGSIPENIGDLATLKVLNLNGNNLVGLIPDALGNMELDNLNLNNNRFMGPIPNFKASTVSYDNNDFCQNKRGVPCAFEVMALLGFLGELNYPSNLVESWTGNDPCKGLWLGIKCNANGKVSLINLPHFNLSGTLSPSVANLGSLVEIRLGGNKLSGVVPSNWTSLTSLTLLDLSGNNISPPLPKFTTGLKPVIDGNPLFNGNPEAPSSGNNNPSAGSGNAENTPAHSNSSSTDSFESKKSKRKGLVLIVAPIAGVAAAAFLLIPLYVYCFRRRKDGYQAPSSLVIHPRDPSDSDSTVKIAIANNTNGSISTVTGSGTGSRNSSGIGESHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMPQGALSKHLFHWKSLELEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKPSNILLGDDFRAKVSDFGLVKLAPEGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMAAIDPVLDIKEETFESISIIAELAGHCTAREPSQRPEMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDLSYMDLEDSKSSIPARPTGFADSFTSADGR. 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04906 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 728 740 IPR008271 GO:0004672|GO:0006468
Seca2g04906 949 FunFam receptor protein kinase TMK1 565 680 - -
Seca2g04906 949 MobiDBLite consensus disorder prediction 454 487 - -
Seca2g04906 949 Gene3D Ribonuclease Inhibitor 25 326 IPR032675 -
Seca2g04906 949 SMART serkin_6 603 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04906 949 Gene3D Phosphorylase Kinase; domain 1 567 680 - -
Seca2g04906 949 SUPERFAMILY Protein kinase-like (PK-like) 579 879 IPR011009 -
Seca2g04906 949 ProSitePatterns Protein kinases ATP-binding region signature. 609 631 IPR017441 GO:0005524
Seca2g04906 949 PANTHER OSJNBA0070M12.3 PROTEIN 9 949 - -
Seca2g04906 949 MobiDBLite consensus disorder prediction 449 489 - -
Seca2g04906 949 FunFam receptor protein kinase TMK1 681 898 - -
Seca2g04906 949 Pfam Protein kinase domain 606 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04906 949 SUPERFAMILY L domain-like 22 309 - -
Seca2g04906 949 SMART LRR_typ_2 113 136 IPR003591 -
Seca2g04906 949 SMART LRR_typ_2 418 442 IPR003591 -
Seca2g04906 949 SMART LRR_typ_2 394 417 IPR003591 -
Seca2g04906 949 SMART LRR_typ_2 264 287 IPR003591 -
Seca2g04906 949 SMART LRR_typ_2 240 263 IPR003591 -
Seca2g04906 949 SMART LRR_typ_2 190 214 IPR003591 -
Seca2g04906 949 CDD STKc_IRAK 609 882 - -
Seca2g04906 949 FunFam Receptor-like kinase TMK4 25 325 - -
Seca2g04906 949 SUPERFAMILY L domain-like 331 443 - -
Seca2g04906 949 MobiDBLite consensus disorder prediction 927 949 - -
Seca2g04906 949 Gene3D Transferase(Phosphotransferase) domain 1 681 899 - -
Seca2g04906 949 ProSiteProfiles Protein kinase domain profile. 603 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04906 949 FunFam Leucine-rich repeat receptor-like kinase 330 455 - -
Seca2g04906 949 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Seca2g04906 949 Pfam Leucine rich repeat N-terminal domain 332 368 IPR013210 -
Seca2g04906 949 Pfam Leucine rich repeat 242 300 IPR001611 GO:0005515
Seca2g04906 949 Gene3D Ribonuclease Inhibitor 330 453 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04906 Seca-Chr2 135521998 135525634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04906 79 916 Receptor kinase-like Gene Family AT1G55610 29.832 1.55e-86 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca2g04906 Pkinase 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04906 - - gmx:100305366 1467.98