Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04894 ATGAGAACAGGAAGCTGTGGTGTGCAACAGGGGCTAACATCAGAGGCTGCAAGCATAGTGAAGCAAGCAGTGACTCTAGCGAAGCGTCGTGGCCATGCCCAAGTGACTCCACTACACGTGGCAAACACTATGCTTGCAGTTACAAACGGTTTGCTTAGAAGGGCTTGTCTTCAATCTCATTCTCACCCTCTCCAATGCAAGGCCTTAGAGCTTTGCTTCAATGTTGCGCTTAACCGTTTGCCAGCTGCCTCTTCTTCTATGGGCTCACACTCTCACTGTCCTTCCATCTCCAATGCCTTGGTTGCTGCATTCAAACGTGCTCAAGCTCACCAACGCCGTGGATCCATTGAGAATCATCAACAACAGCCTCTCTTGGCAGTGAAAGTAGAGGTGGAACAGCTTGTGATTTCCATCTTGGATGATCCTAGTGTTAGTAGAGTCATGAGAGAGGCTGGATTCTCTAGTATCCAAGTGAAAACCAATGTTGAACAAGTTGTAATATCTTCTCAGAATAATTCCCTTTCTGTGAAGGAAAACAACAACCTAACTCTGTCTCATCAGAAGGTAGAGGATATTGCCAGTGTTATAGATAATTTGTTGAATCAGAGAAGGAGAAGCACTGTGATTGTAGGGGAGTGTCTAACTAGTCTTGAGGGTGTGGTTAAAGGGGTGATGGATAAGGTTGATAAAGGAGATGTTAGTGAGTCTTTGAGAGGTGTCAAGTTTATATCACTTTCTCTTTCTGATTTTAGCCATGTCTCTAGAGTTGAGGTTGAGCGCAAGGTTGAGGATCTTAGGAGATTTTCAAATAGCAAAGGTCATATTTTGTATTTGGGAGATCTTAAATGGGTATTTGAGTATATGGCATGTTCTAGACAGAGTGAGAGAGGGTACTATTGTCCTGTGGATCACTTGATAATGGAAATTGGGAAGCTTGTGAGTGGGGTTGGAGAGTATGGAAGGTTTTGGTTGATGGGAATTGCCACTTTCCAAGCTTACATGAGATGCAAAAATGGTCATCCATCACTAGAGACTGTTTGGGGTCTTCATCCTGTTACTATCCCTGCAGGCACCTTGTGCTTGAGTCTCATCACTGACAGTGGCCTACAAAACCAATCCACCGAAATCCGAAGCTGGCAACAGGACAGTACTTGTAACAGTTACTCCTCCACTTCAACCCTTCCAACGTGGCTCCAACAGTACAAGAATGAGAACAATTCCAACCCTAATTCCACATCTTCTAGTGAAGCCATGGAAGTGGAGTATGTGAGCAAATTCAAAGAGTTCAATTCAGAGAACATGAAAACACTCTACCATGCTTTGGAAGAGAAAGTCCCTTGGCAGAAAGATATAATACCAGAAATTGTAAGCACTGTTTTAAAATGCCGATCTGGCATGCTAAGAAGAAAAGGGAATGTGAGAAGCAATGAGGTAAAAGTAGAAACCTGGTTGTTTTTCCAAGGTGTTGATGTGGAAGCTAAAGAGAAAATAGCCAGAGAATTAGCAAGTTTAGTATTTGGTTCCAAGAGCAATCTCATTTCAATTCCTCTGAGCAGGTTTTCCACTAAGGAGTATTGCAGGAACAAAAGATCAAGAGAGGAACCAAGTTGCAGTTACATTAATAGATTTGTGGGTGCAGTCTCAAGTAATCCTCATAGGGTCTTTCTAATTGAGGACATAGATCAAGCAGATTATTCTTCTCAATTGTATTTTAAAAGGGCTATGGAAAGAGGGAGTGTTTCAGATTCAAATGGTGAAGAATTTGGTCTTTGTGATGCCATCATCATTCTCAGCTGTAAAAGTTTGGATTCAAGGTCAAGGGCTAATTGCTATGGTATTGCTACTTCGGAGGAGACAATGATCCCTTGTGTTTCTTTGGATTTGAATATTTCCATTGATAATGACTGCAATGATGACCATTCCGTGGATGAAATTGGGCTACTTGAATCTGTAGACAGACGGATTATCTTTAAAACTCAGGAACTATAA 1989 0.4198 MRTGSCGVQQGLTSEAASIVKQAVTLAKRRGHAQVTPLHVANTMLAVTNGLLRRACLQSHSHPLQCKALELCFNVALNRLPAASSSMGSHSHCPSISNALVAAFKRAQAHQRRGSIENHQQQPLLAVKVEVEQLVISILDDPSVSRVMREAGFSSIQVKTNVEQVVISSQNNSLSVKENNNLTLSHQKVEDIASVIDNLLNQRRRSTVIVGECLTSLEGVVKGVMDKVDKGDVSESLRGVKFISLSLSDFSHVSRVEVERKVEDLRRFSNSKGHILYLGDLKWVFEYMACSRQSERGYYCPVDHLIMEIGKLVSGVGEYGRFWLMGIATFQAYMRCKNGHPSLETVWGLHPVTIPAGTLCLSLITDSGLQNQSTEIRSWQQDSTCNSYSSTSTLPTWLQQYKNENNSNPNSTSSSEAMEVEYVSKFKEFNSENMKTLYHALEEKVPWQKDIIPEIVSTVLKCRSGMLRRKGNVRSNEVKVETWLFFQGVDVEAKEKIARELASLVFGSKSNLISIPLSRFSTKEYCRNKRSREEPSCSYINRFVGAVSSNPHRVFLIEDIDQADYSSQLYFKRAMERGSVSDSNGEEFGLCDAIIILSCKSLDSRSRANCYGIATSEETMIPCVSLDLNISIDNDCNDDHSVDEIGLLESVDRRIIFKTQEL. 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04894 662 Gene3D - 411 623 IPR027417 -
Seca2g04894 662 Gene3D - 171 353 IPR027417 -
Seca2g04894 662 Pfam Clp amino terminal domain, pathogenicity island component 23 54 IPR004176 -
Seca2g04894 662 Pfam Clp amino terminal domain, pathogenicity island component 129 165 IPR004176 -
Seca2g04894 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 601 IPR027417 -
Seca2g04894 662 SUPERFAMILY Double Clp-N motif 12 159 IPR036628 -
Seca2g04894 662 ProSiteProfiles Clp repeat (R) domain profile. 8 168 IPR004176 -
Seca2g04894 662 Gene3D - 9 168 IPR036628 -
Seca2g04894 662 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04894 Seca-Chr2 135398618 135401521 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04894 - - hsyr:120159881 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04894 2 135398618 135401521 Seca6g02089 6 80789479 80795563 ECH
Seca2g04894 2 135398618 135401521 Seca2g04894 2 135398618 135401521 ECH
Seca2g04894 2 135398618 135401521 Seca8g01582 8 29334737 29338039 ECH
Seca2g04894 2 135398618 135401521 Seca6g02722 6 91869327 91874734 ECH