Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04867 ATGTCGATAAACCACTACTCGTCAGAGGCACCCGAAACGACAACGTTCTGGTGGACTACGTCTACTCAGCAGCAACAGCAAAACCCACCCATCCCCAACCCCAACCCCCAATTCTGCCTCAATTCTCACACTCCATCTTCTTCAACGCACCGTTTCAACCTCAACAACAACCAACACGAAGAAGAAGTCGAAGACGACGTCGTCGAAGAGGAGGAGGAGGACCAACGTTCACAAGAAGAAGGAGTAGTTGTTGAGGAACAGAAGGAAGCCATGTTCGAGAAGCCACTGACTCCCAGCGACGTTGGAAAGCTCAACCGCCTCGTCATTCCCAAACAGCACGCCGAAAAGTATTTCCCACTCGGCGGCTCTGACTCAGGCTTGCTGCTGAGTTTCGAGGACGAGTCAGGTAAGTGTTGGCGCTTCCGTTACTCCTATTGGAATAGTAGCCAGAGTTACGTTTTGACCAAAGGTTGGAGCCGTTACGTCAAAGACAAACGCCTCGATGCCGGCGACGTCGTTTTGTTCCACAGACACCGTACTCACTCTAACCGCTTCTTCATCACCTGGAGGCGCCGCCACCCTACACCACCTGCGCACGTTAGCGCAAGGCCTAACACTAACACTGACGGCAACGGGAATGGGAATGGGAATGGCTCTGTTCCTCTAGCGTGGACCAGAGGCTTCTATTCTGCGCCTCCTTATCCTACGCATCATCACCCCTTGCCATACCAACCTGACACCTCTCTTCATGCAGGTGTGGAGGGTCCCAAGGTCAGAAAGCGGGGGGAAACAGTTGTAATTCATCAGGTTCCAGGGTGCTGA 822 0.5316 MSINHYSSEAPETTTFWWTTSTQQQQQNPPIPNPNPQFCLNSHTPSSSTHRFNLNNNQHEEEVEDDVVEEEEEDQRSQEEGVVVEEQKEAMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGSDSGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFHRHRTHSNRFFITWRRRHPTPPAHVSARPNTNTDGNGNGNGNGSVPLAWTRGFYSAPPYPTHHHPLPYQPDTSLHAGVEGPKVRKRGETVVIHQVPGC. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04867 273 Pfam B3 DNA binding domain 92 192 IPR003340 GO:0003677
Seca2g04867 273 MobiDBLite consensus disorder prediction 62 79 - -
Seca2g04867 273 ProSiteProfiles B3 DNA-binding domain profile. 92 193 IPR003340 GO:0003677
Seca2g04867 273 MobiDBLite consensus disorder prediction 20 82 - -
Seca2g04867 273 CDD B3_DNA 91 191 IPR003340 GO:0003677
Seca2g04867 273 Gene3D - 85 200 IPR015300 -
Seca2g04867 273 MobiDBLite consensus disorder prediction 200 218 - -
Seca2g04867 273 Coils Coil 60 80 - -
Seca2g04867 273 SMART B3_2 92 193 IPR003340 GO:0003677
Seca2g04867 273 SUPERFAMILY DNA-binding pseudobarrel domain 88 194 IPR015300 -
Seca2g04867 273 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 49 202 IPR044800 GO:0003700
Seca2g04867 273 MobiDBLite consensus disorder prediction 196 218 - -
Seca2g04867 273 MobiDBLite consensus disorder prediction 37 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04867 Seca-Chr2 135104379 135106460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04867 84 192 RAV Transcription Factor Family AT2G36080 78.947 3.20e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca2g04867 B3 4e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04867 K09287 - gmx:100818164 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04867 2 135104379 135106460 Seca2g04867 2 135104379 135106460 ECH
Seca8g05126 8 141249959 141252264 Seca2g04867 2 135104379 135106460 PCT