Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04847 ATGGAAAATATTATACCACCAGGTTATCGGTTCTACCCTACAGAAGAAGAGCTTATTAAGTTCTATCTTCACAATAAACTCGAAGGAGAGAGGGAGGACATGAATCGCGTCATACCAATCCTTAATATTTATGACTTCCACCCATCCCAACTCCCACAAAATTCAGGAGAGGTGAGTGTGACAGAGACGGAGCAATGGTTCTTTTTCGTTCCGAGGCAAGAAAGTGAAGCGAGAGGAGGGAGACCAAAGCGTCTCACAAATACAGGGTACTGGAAAGCTACCGGCTCTCCGAATCATGTTTATTCCTCTGATAATCGGATCATCGGCTTGAAAAGGACCATGGTTTTCTATGACGGAAGAGCCCCTAACGGAACTAAAACCGATTGGAAGATGAATGAGTATAAGGCCATCAAAATCGGATCAGCATCCTCTTCTCCCATGCATGCGCAGTTAAGGGAGGAATTCAGTTTATGCCGAGTGTACAAGAAATCAAAGTGCTTGCGGGCATTTGATAGACGACCACCGGCAAGGAGGGAGAGGGAGAGGGAGAGGAGAGGTGAGGAAGCTGAGCATAAGAAAAAGGGGGAGAGTCAGAGAAGTAGTCAAACAGTAATAAGCTCACCAGAAAGTTCGTTATCCTCTGGCCAAATGGACGTTGATGAGGAACCTTTCTTGGACTGGGAGCAGGTGGATCTCTTCTTGGGATCCGAACCATGA 717 0.463 MENIIPPGYRFYPTEEELIKFYLHNKLEGEREDMNRVIPILNIYDFHPSQLPQNSGEVSVTETEQWFFFVPRQESEARGGRPKRLTNTGYWKATGSPNHVYSSDNRIIGLKRTMVFYDGRAPNGTKTDWKMNEYKAIKIGSASSSPMHAQLREEFSLCRVYKKSKCLRAFDRRPPARRERERERRGEEAEHKKKGESQRSSQTVISSPESSLSSGQMDVDEEPFLDWEQVDLFLGSEP. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04847 238 MobiDBLite consensus disorder prediction 172 224 - -
Seca2g04847 238 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 196 - -
Seca2g04847 238 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
Seca2g04847 238 MobiDBLite consensus disorder prediction 199 217 - -
Seca2g04847 238 MobiDBLite consensus disorder prediction 172 198 - -
Seca2g04847 238 Gene3D NAC domain 14 167 IPR036093 GO:0003677|GO:0006355
Seca2g04847 238 SUPERFAMILY NAC domain 4 163 IPR036093 GO:0003677|GO:0006355
Seca2g04847 238 ProSiteProfiles NAC domain profile. 5 163 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04847 Seca-Chr2 134947311 134948501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04847 1 230 NAC Transcription Factor Family AT5G22380 51.064 1.29e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g04847 NAM 5.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04847 - - gmx:100777948 328.561