Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04839 ATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGACAATGAAACAGTAGGTGTTTTGACAAGTAGGCTTGGGGCAGATTGTCAACAAGTGTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAACATTCTTCAGGGGGGAGGTTCATTAATTTACTTGTTGATTTTGTCTTGGCCACTTGGTTTATGTACATTGATGATATGCTCCCTATTAGCAGCAGTTATGGAAGTTCTGCATAGGTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTGACTGCTTCTGCTAATGATGTAGCTCAAGAGACGTTGTCTCTTACTAGAACTGTCCGAGTTTATGGAACAAAAGAAGGAGAATTTGGAAGGTACAAATGGTGGCTGGGGAAATTAGCTGACATGAGCATGAGACAAAGTGCTGCATATGGGTTTTGGAATTTTAGCTTCAACACTCTCTATCATTCAGCTCAGGTTATCGCTGTGCTATTTGGAGGAATGTCTATTCTTGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTCTACAGTGAATGGGTAATTTATTCAACCTGGTGGGTGGGGGACAATATATCCTCTTTGATGCAATCAGTTGGAGCTAGTGAAAAAGTATTCCACTTAATGGATCTGTCACCTAGCAGCCAATTCATAGCAAGAGGTATGCATTTTTATGAGCTATGTTTTACTATTTCATATGGAATAAAGTTGCAGAGGTTAACAGGACAAATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCAAGACCAACGGTATCTGTAGTGCAACATGTAGACTTTTTTGTCAATCCTGGTGAGGTGGTTGCCATTGTTGGTCTTAGCGGTTGCGGAAAAAGCACATTGGTGAATCTTTTGCTCTGTCTCTATGAGCCTACAAATGGTCAGGTTTTGATAGATGGTATCCCTCTTAAAGACTTGGACATCATATGGTGGAGAGAGAGAATTGGATATGTGGGACAGGAACCCAAGCTATTCCGGATGGATATTAGTTCAAACATCATATATGGATGTACCCGAGATGTAAAGCAGGAGGATGTTGAATGGGCTGCAAAGGAAGCATATGCCCATGACTTCATATCAGCACTTCCCAATGGTTATGAAACACTTGTTGATGATGATCTGTTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGGGACCCGAAAATATTGATCCTTGATGAAGCCACTAGTGCACTGGATGCTGAAAGTGAACATAATGTGAAGGTCTGCCTCTGA 1305 0.4046 MRETLYSSLLLQDISFFDNETVGVLTSRLGADCQQVSRVIGNDLNLILRNILQGGGSLIYLLILSWPLGLCTLMICSLLAAVMEVLHRYQKKAARLIQEVTASANDVAQETLSLTRTVRVYGTKEGEFGRYKWWLGKLADMSMRQSAAYGFWNFSFNTLYHSAQVIAVLFGGMSILAGHITAEKLTKFILYSEWVIYSTWWVGDNISSLMQSVGASEKVFHLMDLSPSSQFIARGMHFYELCFTISYGIKLQRLTGQIEFLNVSFHYPSRPTVSVVQHVDFFVNPGEVVAIVGLSGCGKSTLVNLLLCLYEPTNGQVLIDGIPLKDLDIIWWRERIGYVGQEPKLFRMDISSNIIYGCTRDVKQEDVEWAAKEAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARDPKILILDEATSALDAESEHNVKVCL. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04839 434 Coils Coil 79 99 - -
Seca2g04839 434 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 258 434 IPR003439 GO:0005524
Seca2g04839 434 SMART AAA_5 285 434 IPR003593 GO:0016887
Seca2g04839 434 CDD ABC_6TM_TAP 1 219 - -
Seca2g04839 434 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 211 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g04839 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 431 IPR027417 -
Seca2g04839 434 Pfam ABC transporter 277 420 IPR003439 GO:0005524
Seca2g04839 434 Gene3D ABC transporter type 1, transmembrane domain 1 224 IPR036640 GO:0005524|GO:0016020
Seca2g04839 434 PANTHER ABC TRANSPORTER B FAMILY 1 432 IPR039421 -
Seca2g04839 434 Gene3D - 248 434 IPR027417 -
Seca2g04839 434 Pfam ABC transporter transmembrane region 1 195 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g04839 434 SUPERFAMILY ABC transporter transmembrane region 1 225 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04839 Seca-Chr2 134865929 134869390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04839 1 434 Calmodulin-binding Proteins AT2G36910 32.886 2.94e-53 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04839 - - gmx:100775951 729.169