Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04829 ATGCCTGGGACAAGACAGAATCCAGAGTCACCAGAGGGGAACAGTGAGCCTGAAAAACCCACAGATTCTGATGAGCAGGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAGGAAGAAGAGGAAGAGGAAGAGGAGGTGGAAGAGGAAGAAGAAGAGGTAGAGGAAGAGACTAAGCCCTCAGATGGTGAGGATGAGATGCGAGTAGCAGATACTAAGGATGAGGTTGAGAAAAAGAAACACGCTGATCTTCTTGCAATTCCACCTCACGGATCAGAGGTCTATATTGGGGGTATTCCTCAAAATGTTTCTGAAGAAGATTTGAGGGTCTTCTGTCAATCTGTGGGAGAAGTGTCAGAGGTAAGGGTTATGAAGGGGAAAGAATCAGGTGAAGGATTAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATTGAGGAGCTGAACAATTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCAACATCTCAAGCTAACAATAGGTTGTTCATTGGTAATGTTCCTAAAAGTTGGACTGTAGAAGATATGAAGAAGGTTGTTGCAGAGGTTGGCCCTGGAGTCCTTTCTGTGGAGCTCTTGAAGGATCCACAGAGTTCTGGCCGTAATAGGGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACTCTAAATTTAAACTTGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGAATCATCTGCAGCATCCCAGGTGATCTATTGTATGCTTTATATTTTTAAAGTAAAAGCAGTGTATGTAAAGAATCTTCCAGAAAACATTACTCAGGATTGCCTTAAGAAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTCTCCCTCCTGCTAAAGCTGGACAAGAAAAAAGCAGATTTGGTTTTGTGCACTTTTCTGATAGGTCAAGTGCCATGAAGGCGTTGAAGAATACAGAGAAGTATGAAATTGAAGGCCAAACTTTGGAGTGTTCACTTGCTAAGCCACAGGCAGATCAGAAGTCGTCTGGTGCATCAAATTCACAAAAATCAGTTGTACTTCCCACTTATCCACCTCGTCTTGGTTATGGTATGGTTGGAGGTGCATATGGTGCTATTGGTGCAGGATATGGTGCTGCTGGCTTTGCACAACCACTTATGTATGGTGCGGGAGCAACCCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCAGATGGAAGGATCGGATATGTGTTGCAACAGCCGGGTTTGCAACAGCATGCTCCTTCACCAGTATCCCGTAATGGAAGAGGTGGTGGTGGTAGCTCAAGTGGTGGAAAACGCAATAATGATAATAATAACCGTAACCGTGGACATGGCCGATATCATCCCTACTAA 1488 0.4341 MPGTRQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEETMEEEVEYEEVEEEEEVEEEEEEEEEEVEEEEEEVEEETKPSDGEDEMRVADTKDEVEKKKHADLLAIPPHGSEVYIGGIPQNVSEEDLRVFCQSVGEVSEVRVMKGKESGEGLGYAFVTFKTKELASKAIEELNNSEFKGKRIKCSTSQANNRLFIGNVPKSWTVEDMKKVVAEVGPGVLSVELLKDPQSSGRNRGFAFIEYYNHACAEYSRQKMSNSKFKLDNNAPTVSWADPRNSESSAASQVIYCMLYIFKVKAVYVKNLPENITQDCLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIEGQTLECSLAKPQADQKSSGASNSQKSVVLPTYPPRLGYGMVGGAYGAIGAGYGAAGFAQPLMYGAGATPAGMAMMPMLLPDGRIGYVLQQPGLQQHAPSPVSRNGRGGGGSSSGGKRNNDNNNRNRGHGRYHPY. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04829 495 SUPERFAMILY RNA-binding domain, RBD 107 274 IPR035979 GO:0003676
Seca2g04829 495 Gene3D - 22 190 IPR012677 -
Seca2g04829 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 372 IPR000504 GO:0003723
Seca2g04829 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 272 IPR000504 GO:0003723
Seca2g04829 495 SMART rrm2_1 111 184 IPR003954 GO:0003676
Seca2g04829 495 MobiDBLite consensus disorder prediction 1 93 - -
Seca2g04829 495 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 191 271 - -
Seca2g04829 495 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 19 480 - -
Seca2g04829 495 SUPERFAMILY RNA-binding domain, RBD 294 380 IPR035979 GO:0003676
Seca2g04829 495 Gene3D - 292 414 IPR012677 -
Seca2g04829 495 MobiDBLite consensus disorder prediction 27 78 - -
Seca2g04829 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Seca2g04829 495 MobiDBLite consensus disorder prediction 454 481 - -
Seca2g04829 495 MobiDBLite consensus disorder prediction 79 93 - -
Seca2g04829 495 CDD RRM_SF 112 184 - -
Seca2g04829 495 FunFam RNA recognition motif-containing protein 21 190 - -
Seca2g04829 495 Coils Coil 38 78 - -
Seca2g04829 495 MobiDBLite consensus disorder prediction 454 495 - -
Seca2g04829 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
Seca2g04829 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 365 IPR000504 GO:0003723
Seca2g04829 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 259 IPR000504 GO:0003723
Seca2g04829 495 Gene3D - 191 271 IPR012677 -
Seca2g04829 495 SMART rrm1_1 111 184 IPR000504 GO:0003723
Seca2g04829 495 SMART rrm1_1 295 368 IPR000504 GO:0003723
Seca2g04829 495 SMART rrm1_1 191 268 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04829 Seca-Chr2 134766028 134769154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04829 112 439 Eukaryotic Initiation Factors Gene Family AT4G34110 26.776 1.65e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04829 K13161 - gmx:100798476 631.713