Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04801 ATGGCGGAAGAACATCGATGCCAAGCACCGGAAGGCCACAGACTCTGCGCCAACAACTGCGGCTTCTTCGGTAGTCCAGCCACCATGAATCTCTGCTCCAAATGTTACAGAGACATCCGTTTGAAGGAGCAGGAACAAGCCAAAACCAAATCAACCATCGAAACCGCTCTCTCCTCTTCCTCCGCTGCCGCCGCCGCGGCCGCTGCTGTGGCTGCCGCTCCGGCCGTCGAATCCCTCCCTCAGCCGGCGGCGGTTATCTCGCCGACAATCGCGCCTGACGCGTCGAGCCCTGCGCCCGTAGCGGTCGTCGAGTCGGCTCAGCCGAACCGGTGCGGATCTTGCCGAAAACGCGTCGGTCTGACCGGGTTCAAGTGCAAGTGCGGAACCACGTTTTGCGGGGCCCACAGGTATCCAGAGAAACACGGTTGCGGCTTTGATTTCAAGGCGGTGGGGCGAGAGGAGATAGCGCGAGCGAATCCAGTGATCAAAGCTGATAAGCTGAGAAGGATTTAA 513 0.5965 MAEEHRCQAPEGHRLCANNCGFFGSPATMNLCSKCYRDIRLKEQEQAKTKSTIETALSSSSAAAAAAAAVAAAPAVESLPQPAAVISPTIAPDASSPAPVAVVESAQPNRCGSCRKRVGLTGFKCKCGTTFCGAHRYPEKHGCGFDFKAVGREEIARANPVIKADKLRRI. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04801 170 Gene3D - 87 166 IPR035896 -
Seca2g04801 170 Gene3D - 1 64 - -
Seca2g04801 170 FunFam Zinc finger AN1-type containing 6 91 166 - -
Seca2g04801 170 Pfam AN1-like Zinc finger 111 147 IPR000058 GO:0008270
Seca2g04801 170 SMART AN1_Zf_4 111 148 IPR000058 GO:0008270
Seca2g04801 170 SUPERFAMILY AN1-like Zinc finger 103 165 IPR035896 -
Seca2g04801 170 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Seca2g04801 170 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Seca2g04801 170 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 170 - -
Seca2g04801 170 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Seca2g04801 170 ProSiteProfiles Zinc finger AN1-type profile. 105 151 IPR000058 GO:0008270
Seca2g04801 170 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04801 Seca-Chr2 134523792 134524304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04801 1 170 C2H2 Transcription Factor Family AT3G52800 52.778 8.14e-56 171