Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04790 ATGGGTTCATTCTCTGGCACTTGTGAAATAGTTGAAGCAAGGGAGGAGCTAAGTACAGGGAAATCTGTAAGAGTTTATCAGTCAAATTCTCAGTATAACAAGTCTGAGAAAAATCAGAAGCCTTCAGTGCTGAACCTGGGATACAAGGATAATCTAGATGATGATATTAATAAGCTGTTTGAATCAATTGCTATTAAATCTGCATCAAGGGATTTGAGCCTTTTACAAGATGGTACAAGCCCTAGGCTGAAAAATGCATTAAAAAAGCCAATGACGACGGGTGTCCCTCGGTCCCCACGAGTCGGGACTTCTGAGCCTGTTAATTTGAAGCAGGCATTGAGAGACCTTTGTATATCTAAGGCATCAGAAATGGCTGCTATGAAACGATTATCAAAGTCAACAGCTTCTCCAAGAATATCAGAAGCTGGGAAGATACAGACACTGTACGGTTCAGTTGTAGCTGAAACCAGTCAATCTGGACCTTCTTTTGTTGAGAGTAAGGGGCATAGAATGGAAAAATCTCTAGTGCAAGAAAAAAGCAAGTCACCCTCATTGGAGGAAACATCTCACTCTCATCAAACTGACCAAATCACATCATGTTCATCGAGTAAAGCTGGGGTTCAATCACAGCGTGTGGTACCTGTTCAAGCAGAAAAACAAACATCTGCATCTTCTCCATCTCTTTATAATACATTTGGAAGCAAATCAGAATTGCCCAAAAATGCTTCTTCCCCTAAAAAGTTAGGAAATAAAGCATCCGTGTCAAATACTGGGCGGAAAGGTAGGTCTCAAACAGTGTCTTCTTCATCTACTTCTGTAAATGGCAGCAAAGTTAACAAACTGCCACGCCATGCCTCCCGTACAGTTAAAACGGTCATCAAGAACAAGAATCTAAGTAAGAAGAAAATAAAGGAGGATTCAGGTTCTGCCTCATGTGATCCTACATCCAATGAAGTGAATAAGTCAGTTCCTGCCACAGCTCAGCTGGTTTGTGAGAGATGTAGGTGTGCTTTAGAAAATACAAGGGAAGAAAAAAACAAAGATATTATAGCATCAGACTCTACCAATCCTGCAAATGGAGTAAACTTGAGTAATGTGCACTCTGGTCCAAATAAACCTGATTTGGCATCAACTGGTGGTAATAAAAGCAAAGCAGTTGCAAAAGTGAAGAAGAACACCAAGTTGAAAGAGCAACTTGAATTTTCACAAAGTTCAAAGAGTAGTCAAGGTGAGTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAATTTGAGTGGCTCAAGTTGTGGCTCCAGGCCTCACATGTCAAAGGATGTTAGGTGGGAAGCCATTCGACATGCTCAAATGCAGTATGGAGTCTTGAGCTTGAGACACTTTAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGGACTGTATACCTTGCTGAACTAATTGGCACTAGTTGCTTGTTTGCTATTAAGGTCATGGACAACGAATTTTTGGCAAGAAGGAAGAAAATGCCTAGGGCTCAAACTGAAAGAGAAATATTAAGGATGCTGGATCATCCATTTCTTCCCACACTGTATGCGCAATTTACATCAGATAATCTGTCATGTCTGGTCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGGTAGAAGTTTTTCGGAGCCAGCAGCAAGGTTTTATGTTGCTGAAGTTCTACTCGCTTTGGAGTACTTGCACATGCTCGGAGTTGTTTACCGTGATTTGAAACCTGAAAACATTCTTGTTCGGGAAGATGGCCACATTATGCTCACAGATTTTGATCTGTCACTGAGGTGTGCTGTTAGCCCAACCCTCCTGCAATCATCTTCTGATGTTGACCCTGCAAAAATTTCTGGTCTTAGTGCACAATCAAGTTGTATCGAGCCATTCTGCATTGAACCCTCATGTCAAGTTCCATGCTTCAGCCCTAGATTCTTACCTGCTGCTGCAAAAGCAAGGAAATTAAAAATTGATCCTGCTGCCCAGGTCAGATCACTGCCACAGCTTGTGGCCGAGCCCACTGATGCAAGATCAAACTCATTTGTAGGTACACACGAATACTTGGCCCCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGCGTTTTCCTTTATGAGCTTTTGTATGGTAGAACACCCTTTAAAGGTTGTAACAATGAAGAAACATTAGCGAACGTGGTGTTGCAAGGTCTTAGATTCCCTGATAGTCCATTTGTTAGTTTCGAAGCGAGGGATCTGATTAGAGGGTTGTTGGTGAAAGAACCTGAGAACCGTTTGGGTTCAGAGAAAGGTGCTGCTGAGATTAAACAGCACCCCTTCTTCGAGGGCCTTAACTGGGCCTTAATTCGTTGTGCTATCCCACCAGAACTTCCAGAGTTTTGTTATTATGAAGTTTCAGACATGACCTTACAAGGCAAGGGAGCTAAGTATTTAGAGTGTAAAGTAGGAGAGCATGTGGAATTCGAGTTGTTTTAA 2526 0.4212 MGSFSGTCEIVEAREELSTGKSVRVYQSNSQYNKSEKNQKPSVLNLGYKDNLDDDINKLFESIAIKSASRDLSLLQDGTSPRLKNALKKPMTTGVPRSPRVGTSEPVNLKQALRDLCISKASEMAAMKRLSKSTASPRISEAGKIQTLYGSVVAETSQSGPSFVESKGHRMEKSLVQEKSKSPSLEETSHSHQTDQITSCSSSKAGVQSQRVVPVQAEKQTSASSPSLYNTFGSKSELPKNASSPKKLGNKASVSNTGRKGRSQTVSSSSTSVNGSKVNKLPRHASRTVKTVIKNKNLSKKKIKEDSGSASCDPTSNEVNKSVPATAQLVCERCRCALENTREEKNKDIIASDSTNPANGVNLSNVHSGPNKPDLASTGGNKSKAVAKVKKNTKLKEQLEFSQSSKSSQGEYSSSTSTSDESNLSGSSCGSRPHMSKDVRWEAIRHAQMQYGVLSLRHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRSFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVSPTLLQSSSDVDPAKISGLSAQSSCIEPFCIEPSCQVPCFSPRFLPAAAKARKLKIDPAAQVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGCNNEETLANVVLQGLRFPDSPFVSFEARDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAIPPELPEFCYYEVSDMTLQGKGAKYLECKVGEHVEFELF. 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04790 841 Gene3D Phosphorylase Kinase; domain 1 457 542 - -
Seca2g04790 841 MobiDBLite consensus disorder prediction 347 434 - -
Seca2g04790 841 MobiDBLite consensus disorder prediction 398 432 - -
Seca2g04790 841 Gene3D Transferase(Phosphotransferase) domain 1 543 610 - -
Seca2g04790 841 Gene3D Transferase(Phosphotransferase) domain 1 688 800 - -
Seca2g04790 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Seca2g04790 841 MobiDBLite consensus disorder prediction 283 297 - -
Seca2g04790 841 SMART serkin_6 459 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04790 841 FunFam serine/threonine-protein kinase D6PK-like 686 809 - -
Seca2g04790 841 FunFam Serine/threonine-protein kinase D6PK-like 457 542 - -
Seca2g04790 841 PANTHER FLIPPASE KINASE 1-RELATED 210 810 - -
Seca2g04790 841 Pfam Protein kinase domain 688 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04790 841 Pfam Protein kinase domain 460 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04790 841 MobiDBLite consensus disorder prediction 158 319 - -
Seca2g04790 841 FunFam serine/threonine-protein kinase D6PK-like 543 610 - -
Seca2g04790 841 MobiDBLite consensus disorder prediction 351 378 - -
Seca2g04790 841 MobiDBLite consensus disorder prediction 189 281 - -
Seca2g04790 841 ProSiteProfiles Protein kinase domain profile. 459 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04790 841 CDD STKc_phototropin_like 457 809 - -
Seca2g04790 841 MobiDBLite consensus disorder prediction 166 188 - -
Seca2g04790 841 SUPERFAMILY Protein kinase-like (PK-like) 434 814 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04790 Seca-Chr2 134309179 134312594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04790 1 841 AGC Kinase Gene Family AT3G52890 52.604 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca2g04790 Pkinase 5.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04790 - K08286 gmx:100792120 1329.31