Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04782 ATGGACTTCCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCAGAATCCCATCAACACCAACAATCATCTGCACCTGTTCTCCCTTTGTTTGTACCTGAACCCAACACCAAAGTCAGCACCTTGTCAGATTCAACATTACCACCACCACCACCTACTATTACTAACAGATTTCCCAGGATGGGGAGTTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCTGAACTTCTTCAACCAATCAAGAAAAGCCTTCTCCATTCACATCCATTTTTCCTTCATCACCCTCTCCAACATTATCAACCTGCTTCAGTGTTGCAATCAGGGTATTGGGGAAGAGCAGCCATGGATCCAGAGCCTGGCCGTTGTCGGAGGACCGACGGCAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCCGGACAAAAGTACTGTGAACGCCACATGCATCGTGGTCGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTGGTGGTGGTGGTGGATCTTTCGGTGCTTCATCCTCCATTTCTTCACCATCTCTGGCTACTGCTTCACTCAAATCTCCTTTTGATCTCCTTCACCTTAATGAACGTTCTTCTGGGACCAAGAGTGAGGACAAAAGCTTGTTTGAAAGCCAAGATCATGTGGGTGGGGATGGAAGATCAGGAGGCCATATGCTGAGGCATTTCTTTGATGATTGGCCACGATCATTGCAAGAGACTGACAACACTGAAAACAATGCTGGTGGAAGGATGAACTCAGCCACATCCCTCTCTATTTCAATGCCTGGAAATGCTTCTTCTTCATCAGATGTGTCATTGAAATTGTCCACTGGGTATGGAGAGGAACCATGCCCAAGAAATGAGAATGTGGACCTAGAAGCAGAGCAACAACAACTGCAATTGAATTGGGCCGGAGGATGGGCTTCAGCTAATCAAGTGGCTTCAATGGGAGGACCACTTGCTGAGGCACTTAGATCATCCACTACAACTTCCTCACCCACTAGTGTTCTGCATCAATTGCCTCGTTGTTCTGGTTCTGAGACCAGCTTCATTAGCACCTAA 1161 0.4772 MDFHLKQWRNQHESEEQHSTKMPKLLPESHQHQQSSAPVLPLFVPEPNTKVSTLSDSTLPPPPPTITNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSHPFFLHHPLQHYQPASVLQSGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSAGGGGGSFGASSSISSPSLATASLKSPFDLLHLNERSSGTKSEDKSLFESQDHVGGDGRSGGHMLRHFFDDWPRSLQETDNTENNAGGRMNSATSLSISMPGNASSSSDVSLKLSTGYGEEPCPRNENVDLEAEQQQLQLNWAGGWASANQVASMGGPLAEALRSSTTTSSPTSVLHQLPRCSGSETSFIST. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04782 386 MobiDBLite consensus disorder prediction 231 260 - -
Seca2g04782 386 PANTHER GROWTH-REGULATING FACTOR 5 29 300 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca2g04782 386 MobiDBLite consensus disorder prediction 293 314 - -
Seca2g04782 386 MobiDBLite consensus disorder prediction 231 246 - -
Seca2g04782 386 MobiDBLite consensus disorder prediction 172 210 - -
Seca2g04782 386 MobiDBLite consensus disorder prediction 357 386 - -
Seca2g04782 386 ProSiteProfiles QLQ domain profile. 76 111 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca2g04782 386 ProSiteProfiles WRC domain profile. 145 189 IPR014977 -
Seca2g04782 386 MobiDBLite consensus disorder prediction 1 31 - -
Seca2g04782 386 SMART QLQ_2 75 111 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca2g04782 386 MobiDBLite consensus disorder prediction 293 308 - -
Seca2g04782 386 MobiDBLite consensus disorder prediction 1 25 - -
Seca2g04782 386 Pfam QLQ 77 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca2g04782 386 Pfam WRC 146 188 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04782 Seca-Chr2 134208319 134211702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04782 1 373 GRF Transcription Factor Family AT3G52910 49.495 6.53e-92 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca2g04782 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04782 - - gmx:100814842 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04782 2 134208319 134211702 Seca2g04782 2 134208319 134211702 ECH
Seca8g05212 8 142340811 142343249 Seca2g04782 2 134208319 134211702 PCT