Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04780 ATGGCTCACAAGTTCTTACACGAGCTACTCAAGGAGGATCAAGAACCATTCCTTCTTAACAAGTACATTTCCGATAGGCGTAGCCAAATAATAAAAAGACCTTCCTCAAAAACCACTTTGCAACCCAAAAAACGCAAATCAATCAATCCAAACCCAATAAATCTCTGTAAAAACGCTTGCTTTTTCTCCTCCACCACCACCCCAGACCTCAGAAAATCTCCATTATTTGAATTTGCATCCCCTGCTAAAAGCCCCTGCAAATCCCCCAACACCATTTTCCTCCACATTCCTTCTCGAACAGCAGCTCTTCTTCTCGAAGCAGCTCTCAGGATCCAGAAACAATCATCAAGTTCCAAAACTAAAACCAAAACCAAACGCTTGGGGTTATTCGGGTCCTTATTCAAGAGACTTACACAACGAAACCACAAGAGGGAAATAGAGTGTGCCAGCAATGTGTCTGTGAAGGATATCTTGGAGTTTGATTCTTCTTCTGTGGGGTGTAGAAAACACTCCAATGACAACAACAACATGGTAAATGCGAATGTGTCTGAGGTGGGGTTTCATTGTTCTTCCAATGGCAGGCCTAGTAGTGCTGTTTGGTCAGAGAGCAACGAAGATAAATCTCAGGACATGGAAACATCAAGTAGTGGTCACTCTGATGACTCTGAAGAAAGGGTTCATTTTGTAACCAATCAAGAACAGTGTGCTTGTTGTCACCATGGTTTCTGTGAAAGCCCTTTCCGTTTTGTTCTTCAAACAAGTCCTTGCTCCGGCAGCCACACGCCGGAGCTACTGTCGCCGAGTCGCCACATAACAGAGGCCAAAGAGAGTAATGGAGGTGAGAGCCTCAATAAATTACAATCAGGGGAAGAAGAGGAAGAAGATAAGGAACAGTGCAGTCCAGTGTCTGTTTTAGACCCACCCTTTGAGGATGATGGGGAAGGGCATGGAAACGATGATGGTTATGATTTGGAGAGCAGCTATGCCATTGTACAGAGAGCTAAACAGCAGCTATTGTACAAGCTTCGCAGATTTGAGAAACTTGCAGAGTTGGATCCGGTAGAGCTTGAGAAAAGAATGCTGGATCAAGAAGAGGATGAGGATGAAACATTTATGGAAGAAGAGGATGATCATGAAGATGAGGATAGTGAAGCATCTTATAAAGAAAATGACTTTAGAGAACTAGTTTTGGATGCTGTCTACCAGAGAAGGGTCCATGACAGACAGCAAATCCCACAAGAGTTTAAGAAACTGATTTCTGATCTCATTTTGGAGGAAGAGAGGGAGCTTAATTGCTTAGAAGATAGGGAGATAGTGATGAAAAGAATATGCAAGAGGCTGGAATTATGGAAAGAAGTGGAGTCTAATACAATTGATATGATGATAGAAGAGGACTTCTCTAGAGACAATGATGGGTGGAAGAAAAATGTAGAGCAGATAAAAATGATGGCTGGGGAGCTTGAGCTCGCTATCTTTGGCTTTCTAGTGGAGGAATTTTCAGAGGAACTAGTAGTATGTTAA 1521 0.4267 MAHKFLHELLKEDQEPFLLNKYISDRRSQIIKRPSSKTTLQPKKRKSINPNPINLCKNACFFSSTTTPDLRKSPLFEFASPAKSPCKSPNTIFLHIPSRTAALLLEAALRIQKQSSSSKTKTKTKRLGLFGSLFKRLTQRNHKREIECASNVSVKDILEFDSSSVGCRKHSNDNNNMVNANVSEVGFHCSSNGRPSSAVWSESNEDKSQDMETSSSGHSDDSEERVHFVTNQEQCACCHHGFCESPFRFVLQTSPCSGSHTPELLSPSRHITEAKESNGGESLNKLQSGEEEEEDKEQCSPVSVLDPPFEDDGEGHGNDDGYDLESSYAIVQRAKQQLLYKLRRFEKLAELDPVELEKRMLDQEEDEDETFMEEEDDHEDEDSEASYKENDFRELVLDAVYQRRVHDRQQIPQEFKKLISDLILEEERELNCLEDREIVMKRICKRLELWKEVESNTIDMMIEEDFSRDNDGWKKNVEQIKMMAGELELAIFGFLVEEFSEELVVC. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04780 506 MobiDBLite consensus disorder prediction 273 323 - -
Seca2g04780 506 Coils Coil 361 381 - -
Seca2g04780 506 MobiDBLite consensus disorder prediction 191 225 - -
Seca2g04780 506 PANTHER OS04G0572500 PROTEIN 1 503 - -
Seca2g04780 506 MobiDBLite consensus disorder prediction 361 388 - -
Seca2g04780 506 MobiDBLite consensus disorder prediction 361 384 - -
Seca2g04780 506 Coils Coil 416 436 - -
Seca2g04780 506 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04780 Seca-Chr2 134127978 134131504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04780 4 504 TRM (TON1 Recruiting Motif) Superfamily AT2G36420 34.783 1.21e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04780 - - gmx:100814311 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04780 2 134127978 134131504 Seca2g04780 2 134127978 134131504 ECH
Seca8g05213 8 142385573 142388856 Seca2g04780 2 134127978 134131504 PCT