Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04777 ATGCAACGGATTGGGGTATTATCAAGCAGCAGCAAAGGCTCCTCCACTGGGCGTCACCCTGTGTACCGTGGGGTGAGGCGTAGGAGTAGTGGCAAATGGGTATCTGAAATTAGAGAGCCAAAGAAACCAAATAGGATTTGGTTAGGGACATTTCCTACACCTGAAATGGCAGCTATTGCTTATGATGTTGCTGCTCTTGCTCTTAAGGGTAAGGATGCTGAACTTAACTTCCCTAACTCAGCTTCTTCTTTCCCTGTCCCTGCTTCTTCCTCTGCTCGTGATATTCAGCTCGCTGCCGCTGGTGCTGCAGCTGCTCTTGGAGCAGCAAAAGATGCATTAACTGCTAGTAGTACTGTTGAAGGAGGGAATAATAATAATCATGTTTCAGTGGCACAAGAGATTTTTGCTGCAGAGGGTAATATTAATATGAATATGAATATGAATGAGTTTATGGATGAGGATTTGATCTTTGATATGCCAAATGTTCTGGTTAATATGGCGGAAGGAATGCTCCTTAGTCCTCCTCGTTTTGACATTACTACTACTGAGTATGCTGACATGGGAGAAGAACAAAACCTCTGGAGTTTCCCTTATTAA 597 0.4372 MQRIGVLSSSSKGSSTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAIAYDVAALALKGKDAELNFPNSASSFPVPASSSARDIQLAAAGAAAALGAAKDALTASSTVEGGNNNNHVSVAQEIFAAEGNINMNMNMNEFMDEDLIFDMPNVLVNMAEGMLLSPPRFDITTTEYADMGEEQNLWSFPY. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04777 198 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Seca2g04777 198 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Seca2g04777 198 MobiDBLite consensus disorder prediction 1 26 - -
Seca2g04777 198 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Seca2g04777 198 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Seca2g04777 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 16 195 IPR045277 GO:0003700
Seca2g04777 198 MobiDBLite consensus disorder prediction 1 17 - -
Seca2g04777 198 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Seca2g04777 198 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Seca2g04777 198 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Seca2g04777 198 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Seca2g04777 198 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04777 Seca-Chr2 134108182 134108778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04777 17 197 AP2-EREBP Transcription Factor Family AT2G36450 63.243 6.31e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g04777 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04777 - - gmx:100799620 240.736