Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04776 ATCCGAGTCTGCCGCTTAACACCTCCGTCTCCTTCATCCTTCGCTTTTATTTCTCATCTTATTCCTTCCCTTCTCTCTCAACTTTTCAAACAGTCTCTTATGGAAATGGAGGATCATCATCACCATCACCATCAGCATCATCACCATGAACAGCAACAACAGTACGGTATTTCTGATCTCAGACAACTCGTGAATGGACCAAGGTCGACTCATTTCCCTTCCATACCACCGCCACAACCCACGGCGGAGCTATTCCCCGCCGGCCACCCCAATCTGACGGCAGCAGCAACTCATCACTATGAGATGATGATGTTTGGTCGTCAAGTAGCTGAGATAATGCCTCGCTGCCTTCATGACTTTGCTGCTTCAACTGATTCTGTTACTGCTGCTGTTGCTGTTGCTGCTGCTGCTAATAATACTAGTATCACTGTTGCCACTCCCACCACCAACAGTGCTTCAACTCCTTCTCTTAGTGGTTTAGAGGCTGAGACAGGTGGCTGCATAGGTGTTGATGCTTCCACGGGAAGATGGCCAAGACAAGAGACTCTTACTCTTCTTGAGATCAGATCTCGTCTCGACCCTAAATTCAAAGAGGCTAATCAAAAAGGCCCTCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAACCTTTACAAATATTACAAGAAGACAAAGGAAGGAAAAGCAGGAAGACAGGATGGGAAGCATTACAGATTCTTTCGCCAACTTGAAGCCTTATATGGTGAAAACAGTAACACAAATTCTGTCCCAGAAACCAATTTTGGTAGCAGCAACCTCCGTTTCCAGACAAGCAATAACCACACACCTTCTCAAACAAATCAAGAAATGTTTCAGTCTCAAAAGCATTGTGATAGCCTCAGCCTCACTAACTCCACTGACTTTGACACAACATCATCAGATGACAATGATCACAGTACTGATCAGGGACTCAGGGAAAATGACTCCATGGTGAAGAGGAAAAAGAGGGTGAGTGGAAGAAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAAATGAGGAAGCTTGTGGAGAAGCAAGAGGAATGGTTGGATAAACTCACCAAGACACTGGAACAGAAGGAAAGGGAGAGGGTGTTAAGAGAGGAAGAGTGGAGGAGACAAGAGGCAGAAAGGTTGGAGAGGGAGCACAAGTTTTGGGCTAAAGAGAGGGCATGGATTGAAGCCAGGGATGCTGCTTTAATGGAGGCTTTGCAAAAATTAACAGGAAGTGAGATAAAGAGTATTCAAAACCATTCTCCTGAGGGTGTAATGGCAGGTGGAATTCAAAACCAAAGTGAAAACCAAAACGAAGATGGAAGTGAAATACTGAATAGCACTGCCAGAGGTGCTGAAAGCTGGCCTGAATCTGAGATTGCAAGGCTTCTACAACTGAGAGCTGAGATGGAGACAAGGTTTCAGCAAAGTGGGTGTTCCGAAGAGGTTATGTGGGAGGAAATAGCAAACAAAATGGCTTGTTTTGGATATGAAAGGACTGGTTTGATGTTCAAAGAGAAATGGGAAAGTATCAGCAATTATCCAAGGAATGTCAAGGAAAGGAACAAGAAGAGGAAGGAAAACTCAAGAGGTTGTTTTTACTTTGATAACAATGACCAGTCTTCTCTATATACTACTCAAGGAGGTGCCTATTGTGATATCAATGATCAAAGGCAAGAGACTATTGGGAGGCTACAGACAAATGATGGTTCTTCACCTTCCAATTCTAATGTTGGAAATGCAGTTGCGGCAGAGAGCTGTTTCCCATTCTTGATGAGTGAGGGTGGAAATTTATGGGAGAATTACAGCTTAAAGGTTAATAAAGCAAACCAAAACCAATGA 1908 0.4376 IRVCRLTPPSPSSFAFISHLIPSLLSQLFKQSLMEMEDHHHHHHQHHHHEQQQQYGISDLRQLVNGPRSTHFPSIPPPQPTAELFPAGHPNLTAAATHHYEMMMFGRQVAEIMPRCLHDFAASTDSVTAAVAVAAAANNTSITVATPTTNSASTPSLSGLEAETGGCIGVDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNTNSVPETNFGSSNLRFQTSNNHTPSQTNQEMFQSQKHCDSLSLTNSTDFDTTSSDDNDHSTDQGLRENDSMVKRKKRVSGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKERERVLREEEWRRQEAERLEREHKFWAKERAWIEARDAALMEALQKLTGSEIKSIQNHSPEGVMAGGIQNQSENQNEDGSEILNSTARGAESWPESEIARLLQLRAEMETRFQQSGCSEEVMWEEIANKMACFGYERTGLMFKEKWESISNYPRNVKERNKKRKENSRGCFYFDNNDQSSLYTTQGGAYCDINDQRQETIGRLQTNDGSSPSNSNVGNAVAAESCFPFLMSEGGNLWENYSLKVNKANQNQ. 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04776 635 CDD GT1 477 541 - -
Seca2g04776 635 PANTHER FI21293P1 148 597 - -
Seca2g04776 635 MobiDBLite consensus disorder prediction 320 342 - -
Seca2g04776 635 MobiDBLite consensus disorder prediction 266 319 - -
Seca2g04776 635 ProSiteProfiles Myb-like domain profile. 476 534 IPR001005 -
Seca2g04776 635 SMART sant 173 236 IPR001005 -
Seca2g04776 635 SMART sant 473 536 IPR001005 -
Seca2g04776 635 CDD GT1 176 241 - -
Seca2g04776 635 Gene3D - 177 239 - -
Seca2g04776 635 Gene3D - 477 538 - -
Seca2g04776 635 MobiDBLite consensus disorder prediction 266 342 - -
Seca2g04776 635 FunFam trihelix transcription factor PTL-like 177 239 - -
Seca2g04776 635 FunFam Trihelix transcription factor GT-2 477 539 - -
Seca2g04776 635 ProSiteProfiles Myb-like domain profile. 169 234 IPR001005 -
Seca2g04776 635 Pfam Myb/SANT-like DNA-binding domain 176 262 IPR044822 -
Seca2g04776 635 Pfam Myb/SANT-like DNA-binding domain 476 561 IPR044822 -
Seca2g04776 635 Coils Coil 367 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04776 Seca-Chr2 134056052 134059321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04776 50 630 Trihelix Transcription Factor Family AT5G03680 45.353 1.86e-145 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca2g04776 Myb_DNA-bind_4 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04776 - - gmx:100813245 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04776 2 134056052 134059321 Seca2g04776 2 134056052 134059321 ECH
Seca8g05218 8 142498868 142501440 Seca2g04776 2 134056052 134059321 PCT