Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g04768 | ATGGACATGGAGAGTGCACGTAGATCGCTGGAAAGATCTAGAGAACCGGGCTCCAAGAAGCCCCGATTGATCGACGACCTGGACAGAGGGTCGAATACACGACCATTTCCTCAGAGACAAGCTGGGTTTCGAACAAATGACAGAGACTCTGAAAGCAGCGATTCTGGTCGTGTTGTTGGGTACCAGCCACAGCCACCGCCTCACCAAGAGCTCGTGACTCAGTATAAGACCGCACTTGCTGAGCTCACTTTCAACTCAAAGCCAATAATTACCAATTTGACTATAATTGCTGGAGAGAACCTGTCTGCTGCCAAGGCAATTGCTGGGACTGTTTGTGCTAACATTCTAGAGGTTCCAACTGAACAAAAGCTGCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGAGGGACTATATAAAATACTTCGCTGCCAGGCTACCTGAGGTATTCTGTAAGGCATACAGATTGGTTGATCCTTCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTATTTCCTCCTCAGACCCTTCAGGTAATTGAGATGGAACTTGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTGCTACACTCAGGAGTGATTCACAGTCACAACGCCCGCCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTAGTTAATGATGCAACTGGAGCTATTTTAAACTCAAATGAGGACTCCGAGAGGCCAGATAGAGCTTTGGGTGCTGCACGGCCATGGCTGGATCCTAGGATTAGCATGCATAATAATCAGCGCACTCATCGAAATGAATTTAACGATTCTGTTCCTGAAAAGAGAATTGGTGGATCCTATGGAGGCAATGAATATAGTTCTGGTATTTCAAGTAGTTTGGGCTCAGGAGTTGGAAGAACTGGAAGTAGGCTCATTGGTGGTGTTGCTGAGACCATATCTGGGCAAAGAAATGGTTTCAGTCTCAAACATGGATCTTCAAATCACGAAGCACCGAAGTCCATGAATTCAGATACACATCGTCCGCCAACACAAACAGTAACTAACATAAGGAGCAGCGTGTTGTCAAATAACTGGAAAAATTCTGAGGAAGAGGAGTTCATCTGGGATGAGATGAACTCTGGTTTGACTGATCATGAACCCAATATCTCTAGCAATTTGAGCACAGACCCATGGATGGCTGATGATGAAAATTTGGAAGGTGAAGATCACCTCCAAATCACACGCCCTTATGGGGCAAAGGTTGATAGAGAAACATCCACTGTTAAGAAACAACTACCTGCATTTGGGGGCCATTCATCATTATCATGGCAATTGCAGAAGCAACACTCAAGTGATAAGTTGAAGCTGAAGCCAGGTCACTCAGAAGGATTTGTTCCCGCTCTTAGTGGCTTACCCGGAAATACATATTCTTCAGATGTCAGTATGAGGAATCGGTCTTTTATACCAAATGCAGCAATAGGAATGGACAAAATTATGGGACAGCAGCAATTTGATTCTGGGGGAGCTGAATCCCCTTCTGAACAGTCACCTTTGCGACAACAGTCTCCATCCCTGTCAGTATCCATACACCACCCTCATTCAGTGCAAAATTTGGCTGAGCAAGATTGTCACTTGACTCCTAAAACATCTCAATTTTTGGGAGGTCTGCAAAACCAATGTATTAGAGATCCCTCACCTGCCCTTCTTCCAAATGTTCAGGCTGGTTACTTAAGAAAATCACAGGAAAAGGACACGCAGGGTCCATTATCTTCTGTACCTTCTTTTCAGCCAATGCTTCAGCAACAGCAGCTTGGTCCTTCTCATATTGATGCTACTGTTAAAACTAAGAAGCCACCCCACTCTAAAGTTTCTATAGCTAGAGAAACTTCAGAAAAGTCAGCCACAAATAGTCTTTCAACTGCATCTGTGAAGAGTGGAGTCATCTCCAAAAAATCAATTACCAGTGGTCTTCCTACTACAAATAGTCTGGATGCAAGGAATCTCCCATCTCAGTCAGGTGGTCGGCCTACTAGGTCTGGTGGTCGTTCCCCTACCGCTATAATTTCTTCAGGGTCTACAGCATCACCATCTTCATCAGTTCCTCTGAATGATTATTTATCTACTCTGCCAAAAATACCTCAAGGAAAGGCTGGACAATCACAAAGGGATTCTACTAAACCACCTGCATCTTCTAAAGTGAGCAGTCCCTCAGCTCCGAGCTCAAATGTCACCAATAAGAATACCATAAACCCAATTGCAAACCTTTTAAGCTCATTAGTTGCAAAAGGTTTGATATCTGCGGAAGCAGAGTCGGCAAGTACAGTACCAAGTGAGATTCTGATGCAGTTGGAAGACCATACTGAAAGCATTACCACTAGTTGCTCTTTGCCGGCTGCTTCAGTTCCTGGTTCTGCAGCTGTTCCAGTACCATCTTCCAGAGATGAGGTAGATGCTGCTGCAAAAGCCTCTCTTGCCTTATCTCAATCAACAAGCACTGAAATAAAAAATCTCATTGGCTTTGATTTTAAACCTGATGTGATTCGAGAAATGCATCCACATGTAATCAGGGAATTATTGGATGATCTCCCACATCATTGCAGAATTTGCGGTGTTAGGCTTAAACAGCAAGAACAGTTTAATAGACACTTGGAGTGGCATGCCACAAGAGAAAGAGAACAGAGTGGTCTAATTACGGCGTCAAGAAGATGGTATGCAGAGTCAAATGACTGGATTGCTGGCAAGGTTGAATATCCATCTGAGCCTGAGATGTCTGATTCTGTGGATGTGTATGACAAAACAACAGACACGAGTCAATTTGATACTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGCGAGCTATTTGTAGATGTGTACTGTCAGGAAACGGACCAGTGGATGTTCAAAGGGGCTGTTTACATGAACAACTCAGATAGCAATCGTGAGATGGAAAGTATAAATGAGGGGCCTATCATTCATGCTAGATGCTTATCAGAGAACTCAATATCCAGTGTTACCAAAACGGAACATGATTAA | 3087 | 0.4389 | MDMESARRSLERSREPGSKKPRLIDDLDRGSNTRPFPQRQAGFRTNDRDSESSDSGRVVGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRLVDPSVHSSMRHLFGTWRGVFPPQTLQVIEMELGFTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVNDATGAILNSNEDSERPDRALGAARPWLDPRISMHNNQRTHRNEFNDSVPEKRIGGSYGGNEYSSGISSSLGSGVGRTGSRLIGGVAETISGQRNGFSLKHGSSNHEAPKSMNSDTHRPPTQTVTNIRSSVLSNNWKNSEEEEFIWDEMNSGLTDHEPNISSNLSTDPWMADDENLEGEDHLQITRPYGAKVDRETSTVKKQLPAFGGHSSLSWQLQKQHSSDKLKLKPGHSEGFVPALSGLPGNTYSSDVSMRNRSFIPNAAIGMDKIMGQQQFDSGGAESPSEQSPLRQQSPSLSVSIHHPHSVQNLAEQDCHLTPKTSQFLGGLQNQCIRDPSPALLPNVQAGYLRKSQEKDTQGPLSSVPSFQPMLQQQQLGPSHIDATVKTKKPPHSKVSIARETSEKSATNSLSTASVKSGVISKKSITSGLPTTNSLDARNLPSQSGGRPTRSGGRSPTAIISSGSTASPSSSVPLNDYLSTLPKIPQGKAGQSQRDSTKPPASSKVSSPSAPSSNVTNKNTINPIANLLSSLVAKGLISAEAESASTVPSEILMQLEDHTESITTSCSLPAASVPGSAAVPVPSSRDEVDAAAKASLALSQSTSTEIKNLIGFDFKPDVIREMHPHVIRELLDDLPHHCRICGVRLKQQEQFNRHLEWHATREREQSGLITASRRWYAESNDWIAGKVEYPSEPEMSDSVDVYDKTTDTSQFDTMVVADENQCLCVLCGELFVDVYCQETDQWMFKGAVYMNNSDSNREMESINEGPIIHARCLSENSISSVTKTEHD. | 1029 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g04768 | 1028 | SMART | 558neu5 | 70 | 192 | IPR006569 | - | |
Seca2g04768 | 1028 | CDD | CID_Pcf11 | 72 | 191 | IPR047415 | - | |
Seca2g04768 | 1028 | ProSiteProfiles | CID domain profile. | 67 | 195 | IPR006569 | - | |
Seca2g04768 | 1028 | MobiDBLite | consensus disorder prediction | 202 | 260 | - | - | |
Seca2g04768 | 1028 | MobiDBLite | consensus disorder prediction | 726 | 760 | - | - | |
Seca2g04768 | 1028 | MobiDBLite | consensus disorder prediction | 228 | 253 | - | - | |
Seca2g04768 | 1028 | MobiDBLite | consensus disorder prediction | 336 | 365 | - | - | |
Seca2g04768 | 1028 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Seca2g04768 | 1028 | MobiDBLite | consensus disorder prediction | 202 | 219 | - | - | |
Seca2g04768 | 1028 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 879 | 899 | IPR013087 | - | |
Seca2g04768 | 1028 | MobiDBLite | consensus disorder prediction | 517 | 542 | - | - | |
Seca2g04768 | 1028 | SUPERFAMILY | ENTH/VHS domain | 67 | 190 | IPR008942 | - | |
Seca2g04768 | 1028 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 35 | 1019 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Seca2g04768 | 1028 | Gene3D | - | 64 | 192 | IPR008942 | - | |
Seca2g04768 | 1028 | MobiDBLite | consensus disorder prediction | 515 | 542 | - | - | |
Seca2g04768 | 1028 | MobiDBLite | consensus disorder prediction | 641 | 718 | - | - | |
Seca2g04768 | 1028 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
Seca2g04768 | 1028 | FunFam | polyadenylation and cleavage factor homolog 4 | 64 | 192 | - | - | |
Seca2g04768 | 1028 | MobiDBLite | consensus disorder prediction | 626 | 640 | - | - | |
Seca2g04768 | 1028 | MobiDBLite | consensus disorder prediction | 624 | 760 | - | - | |
Seca2g04768 | 1028 | Pfam | CID domain | 76 | 185 | IPR006569 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g04768 | Seca-Chr2 | 133976487 | 133984946 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g04768 | 60 | 395 | C2H2 Transcription Factor Family | AT4G04885 | 39.886 | 3.39e-57 | 210 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca2g04768 | CID | 6e-13 | CL0020 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g04768 | K14400 | - | gmx:100788958 | 1276.92 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca2g04768 | 2 | 133976487 | 133984946 | Seca2g04768 | 2 | 133976487 | 133984946 | ECH |