Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04767 ATGGACATGGATAGTGCACGTAGATCTTTAGATAGATCGAGAGAACCAGGCTCCAATAAGCCAAGATTGATTGACGAGCTGGACAGAGGGTTGAATACACCAGGCTCCAAGAAGCCAAGATTGATCGACGAGCTGGATAGAGTGTCGAATACACGACCATTTCCTCAGAGACAAGCTGGTTTTCGAACAAATGACAGAGACTCTGAAAGCAGTGATTCTGGTCGCGATGTTGGGTACCAGCCACAGCCACCGCCTCACCAAGAACTCGTGATTCAGTATAAGACCGCACTTGCTGAGCTCACTTTCAACTCAAAGCCAATAATTACCAATTTGACTATAATTGCCGGAGAGAACCTGTCTGCTGCCAAGGCAATTGCTGGGACTGTTTGTACTAACATTCTAGAGGTGCCAACTGAACAAAAGCTGCCATCACTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGAGGGATTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTTCTGTCAATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTATTTCCTCCTCAGACCCTTCAGGTAATTGAGAAGGAACTTGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTGCTACACTCAGGAGTGATTCGCAGTCACAACGCCCGCCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTAGTTAATGATACCACTGGAGCTATTTTAAACTCAAATGAGGACTCAGAAAGGCCAGATAGAGCTTTGGGTGCTGCACGGCCATGGCTGGATCCTAGGGTTAGCATGCATAATAATCAGCACACTCATAGAGATGCATTAAACGATTCTGTTCCTGAAAAGAGAATTGGTGGATCCTATGGAGGCAATGAATATAGTTCTGGTATTTCAAGTAATTTGGGCTCAGGAGTTGGAAGAACTGGAAGTAGGATCATTGGTGGTGTCGCTGAGACCATATCTGGGCAAACAAATGGTTTCAGTCTCAAACATAGTTTTTCTAATCATGAAGCACCAAAGTCCATGAATTCAGATGCACATCGTCAGCCAACACAAATAGTAACTAACATAAGGAGCAGTGGGATGTCAAATAACTGGAAAAATTCTGAGGAAGAGGAGTTCATGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCCAATGTCTCTAGCAATTTGAGCACAGACCCATGGATGGCTGATGATGAAAATATGGAAGGTGAAGATCACCTCCAAATCACACACCCTTTTGGGGCAAAGGTTGGTAGAGAAACATCCACCGTGAAGAAACAACTACCTGCATTTGGGGGCCATTCATCATTATCATGGCAATTGCAGAAGCAGCACTCAAGTGATAAGTTGAATCTGAAGCCGGGTCACTCGGAAGGGTTTGGTTCCGCTCTTAGTGGCTTACCCGGTAATACATATTCTTCAGATATCAGGATGAGGAATCGGTCTTTTATGCCAAATGCAACAATAGGAATGGCCAAAATTATGGGACAGCAGCAATTTGATTCTGGTGGAGCTGTATCCCCTTCTGGGCAGTCACCTTTGCGACAACAGTCTCCGTCCCTGTCAGTATCCATACACCACCCTCATTCAGTGCAAAATTTGGCTGAGAAAGATTGTCGCTTGACTCCTAAAACATCTCAATTTTTGGGTGGTCTGCAAAACCAATATATTAGAGATCCCTCACCTGCCCTTCTTCCCAATGTTCAGGTTGGTTACTTAAGAAAATCACAGGAAAAGGACACGCAGGGTCCATTATCTTCTGTACCTTCTTTTCAGCCAAGGCTTCAGCAACAGCAGCCTGGCCCTTCTCAGACTGATGCTACTGTTAAAACTAAGAAGCCGCCCCAGTCTAAAGTTTCTTTGGCCAGAGAAACTTCAGAAAAGTCAACCACAAATAGTCTTTCAACTGCATCTATGAAGAGTGGAGTCATCTCCAAAAAATCAATTACCAGTAGTCTTCCTACTACAAGAAGTCTGGATGCAAGGAATCTCCCATCTCAATCAGGGGTTCGGCCTACTAGGTCAGGTGGCCATTCCCCTACCACATTAATTTCTTCAGGGTCTACAGCATCACCATCTTCATCAGGTCCTCGGAATGATTATTCATCTACTCTGCTAAAAGTACCTAAAGGAAAGGCGGGACAATCACAAAGGGATTCTACTAAACCACCTGCATCCTCTAAAGTGAGCAGTGCCTCAGCTCCGAGCTCAAATGTCACCAATAAAAATACCTCAAATCCAATTGCAAACCTTTTAAGCTCATTAGTTGCAAAAGGTTTGATATCTGCAGAAGCAGAGTCGGCAAGTACAGTACCAAGTGAGATTCTGATGCAATCGGAAGACCAAACTGAAAGCATTACCACTAGTTGCTCTTTCCCAGCTGCTTCTGTTTCTGGTTCTGCCACTGTTCCAGTATCATCTTCCAGAGTTGAGGTAGATGATGCTGCTAAAGCCTCTCTTGCCTTATCTCAATCAACAAGCACAGAAATAAAAGATCTCATTGGCTTTGATTTTAAACCTGATGTAATTCGAGAAATGCATCCACATGTAATCAGGGAATTATTGGATGAACTCCCTCATCATTGCAGAATTTGTGGTGTTAGGCTTAAACAGAAAGAACAATTCAATAGACATTTAGACTGGCATGCCGCAAGAGAAAGAGAACAAAATGGTCTGATTAGGATGTCAAGAAGATGGTATGCAGAGTCAAATGACTGGATTGCTGGCAAAGCTGAATATTCATCGGAGCGTGAGACTTCTGATTCTGTAGATGTATATGACAAAACATCAGACACGAGTCAATCGGATACTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGGGAGCTATTTGAAGATGTGTACTGTCAGGAAACGGACCAGTGGATGTTCAAAGGGGCTGTTTACATGAACCACTCAGATAGCAATAGTGGGGTGGAAAGTGGAAATGTGGGCCCCATCATTCATGCTAGATGCTTATTATCCAGTGTCACCAAAATGCTGTTCTATTTATGCAGGATCATGATTAATGCTTTACCTCTATAG 3162 0.4367 MDMDSARRSLDRSREPGSNKPRLIDELDRGLNTPGSKKPRLIDELDRVSNTRPFPQRQAGFRTNDRDSESSDSGRDVGYQPQPPPHQELVIQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCTNILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVNSSMRHLFGTWRGVFPPQTLQVIEKELGFTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVNDTTGAILNSNEDSERPDRALGAARPWLDPRVSMHNNQHTHRDALNDSVPEKRIGGSYGGNEYSSGISSNLGSGVGRTGSRIIGGVAETISGQTNGFSLKHSFSNHEAPKSMNSDAHRQPTQIVTNIRSSGMSNNWKNSEEEEFMWDEMNSGLTDHGPNVSSNLSTDPWMADDENMEGEDHLQITHPFGAKVGRETSTVKKQLPAFGGHSSLSWQLQKQHSSDKLNLKPGHSEGFGSALSGLPGNTYSSDIRMRNRSFMPNATIGMAKIMGQQQFDSGGAVSPSGQSPLRQQSPSLSVSIHHPHSVQNLAEKDCRLTPKTSQFLGGLQNQYIRDPSPALLPNVQVGYLRKSQEKDTQGPLSSVPSFQPRLQQQQPGPSQTDATVKTKKPPQSKVSLARETSEKSTTNSLSTASMKSGVISKKSITSSLPTTRSLDARNLPSQSGVRPTRSGGHSPTTLISSGSTASPSSSGPRNDYSSTLLKVPKGKAGQSQRDSTKPPASSKVSSASAPSSNVTNKNTSNPIANLLSSLVAKGLISAEAESASTVPSEILMQSEDQTESITTSCSFPAASVSGSATVPVSSSRVEVDDAAKASLALSQSTSTEIKDLIGFDFKPDVIREMHPHVIRELLDELPHHCRICGVRLKQKEQFNRHLDWHAAREREQNGLIRMSRRWYAESNDWIAGKAEYSSERETSDSVDVYDKTSDTSQSDTMVVADENQCLCVLCGELFEDVYCQETDQWMFKGAVYMNHSDSNSGVESGNVGPIIHARCLLSSVTKMLFYLCRIMINALPL. 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04767 1053 ProSiteProfiles CID domain profile. 85 213 IPR006569 -
Seca2g04767 1053 SUPERFAMILY ENTH/VHS domain 85 210 IPR008942 -
Seca2g04767 1053 MobiDBLite consensus disorder prediction 1 47 - -
Seca2g04767 1053 MobiDBLite consensus disorder prediction 535 558 - -
Seca2g04767 1053 MobiDBLite consensus disorder prediction 749 780 - -
Seca2g04767 1053 CDD CID_Pcf11 90 202 IPR047415 -
Seca2g04767 1053 Pfam CID domain 95 203 IPR006569 -
Seca2g04767 1053 MobiDBLite consensus disorder prediction 611 780 - -
Seca2g04767 1053 MobiDBLite consensus disorder prediction 1 85 - -
Seca2g04767 1053 MobiDBLite consensus disorder prediction 246 271 - -
Seca2g04767 1053 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 62 1032 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Seca2g04767 1053 SMART 558neu5 88 210 IPR006569 -
Seca2g04767 1053 MobiDBLite consensus disorder prediction 611 737 - -
Seca2g04767 1053 MobiDBLite consensus disorder prediction 220 279 - -
Seca2g04767 1053 FunFam polyadenylation and cleavage factor homolog 4 82 210 - -
Seca2g04767 1053 ProSitePatterns Zinc finger C2H2 type domain signature. 897 917 IPR013087 -
Seca2g04767 1053 Gene3D - 82 210 IPR008942 -
Seca2g04767 1053 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04767 Seca-Chr2 133964658 133971872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04767 78 413 C2H2 Transcription Factor Family AT4G04885 38.418 4.35e-56 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g04767 CID 8.6e-14 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04767 K14400 - gmx:100788958 1318.91