Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04761 ATGCTCTCTCTTGCTCAACCCCCATCCTCAGACAGTGACTACTATTATTGTGATGAAACTTCTAACATAATGATCCATCCAGGTCGACCCATCATTGCTGACTTCTCTCCTGTTACGGATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTATGCAACCGAGGCGGCTACTGTAATTTCATGCACCTGAAGAAGATTAGCAGGGATTTGAGAAGGCGATTGTTTGGAAGAAATAGACGATGGAATGGTCGTGGTGGAAGCCGGAGCCGGAGCCCTCCAAGAAACCGAAACTATGAGGAGCGCCCACATTCTGGTCGTAATTCTGGTAGAAGAGATTTTGACAGGTCTCATGGCCATCATGGTAGGAGGCCTAGAAGCCGTAGTCCTCGGCAGCATAGAGGAAAACGAAGTAGAAGTCCTGTGGGCAGGGATAGGAGTCCTCCTGTCAGAGAAAGTAGTGCAGAAAGAAGAGCTAAAATAGAGCAGTGGAACAGGGAGAAGGAACAAGGTGATTCTGGCAACAAGAACAATTCGAATAACAATGATTATGAAGAACCAAATGTTGCACAAAATGGTAGTGAATCTGGTAACCATCAGATATAG 609 0.4565 MLSLAQPPSSDSDYYYCDETSNIMIHPGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRRRLFGRNRRWNGRGGSRSRSPPRNRNYEERPHSGRNSGRRDFDRSHGHHGRRPRSRSPRQHRGKRSRSPVGRDRSPPVRESSAERRAKIEQWNREKEQGDSGNKNNSNNNDYEEPNVAQNGSESGNHQI. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04761 202 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 26 166 IPR009145 GO:0000398|GO:0003723|GO:0089701
Seca2g04761 202 ProSiteProfiles Zinc finger C3H1-type profile. 40 67 IPR000571 GO:0046872
Seca2g04761 202 MobiDBLite consensus disorder prediction 175 202 - -
Seca2g04761 202 PRINTS U2 auxiliary factor small subunit signature 57 69 IPR009145 GO:0000398|GO:0003723|GO:0089701
Seca2g04761 202 PRINTS U2 auxiliary factor small subunit signature 22 46 IPR009145 GO:0000398|GO:0003723|GO:0089701
Seca2g04761 202 MobiDBLite consensus disorder prediction 81 202 - -
Seca2g04761 202 MobiDBLite consensus disorder prediction 142 174 - -
Seca2g04761 202 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 42 65 IPR000571 GO:0046872
Seca2g04761 202 MobiDBLite consensus disorder prediction 118 141 - -
Seca2g04761 202 MobiDBLite consensus disorder prediction 95 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04761 Seca-Chr2 133877373 133878647 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca2g04761 zf-CCCH 0.00017 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04761 K12836 - gmx:100811622 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04761 2 133877373 133878647 Seca2g04761 2 133877373 133878647 ECH