Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04747 ATGGAACCCAATGGACTAGGTGGTGGAATATATCCTAGCATCAGTAGTGGATTGCTAGGAGTAGAAAACCCTTTAAAACAACAACAAAACCTCCAAAATCAGCATAACCCTCTCCCTTTGCAAATGGTTTCTTATGCTACTCACCATGATAGTGCTGACACCCATATTTCACAACCTATCAAACATGGGTACCCTTATAATTCAGGCAAGACCAACAAGCCCCAAACACAAACCACCCTAAGTGATGAAGATGACCCTGGGTTCACAGCAGATGATAGCTCTGTAGACCCAAAGAGGAAAGTGTCACCATGGCATAGAATGAAGTGGACGGATGCCATGGTTAGGCTCTTAATAATGGCTGTTTATTACATTGGAGATGAAGCTGGTTCTGAAGGGACTGATCCAACTGGGAAGAAGAAAGCCACTGGTTTATTGCAAAAGAAAGGGAAATGGAAATCAGTGTCCAGGGGCATGATGGAAAAAGGGTACTATGTTTCCCCTCAGCAATGTGAGGACAAGTTCAATGATTTGAACAAGAGGTACAAGAGGGTCAATGATATTCTAGGCAAGGGAACAGCTTGTAAGGTTGTGGAAAACCAGAGTTTGTTGGACACAATGGATTTGTCTCCAAAGATGAAAGAAGAAGCTAGGAAATTGCTCAACTCCAAGCATCTTTTCTTCAGAGAGATGTGTGCTTACCATAATAGTTGTGGTCATGGGAGCACTTCCAATGTGCACCAATCCACTGAGGGTGGAACTGAGGCTCACCCACAACATCAACAGCAACAGCAAACCCAGCCACAGCAGCAAAGATGCTCTCATTCATCAGAGAATGGTGTGGGGAGTCTAAGAATGTTGAAAGGGAGAAGTGGGGAAGAGGATGAGGATGAGGATGAGGATGATGACTGGGATGACACTTCTGAGGAAGAGGAAGAGGAATCAGGAGAAGGAGGGTCAAAGGGTCAAGTAGAGGAGCTGGATGAGAGTGATGTGATGAGGAAGAGACCAAGGAAAGGAGGGTTTTGTGTGTCATCAAAGTCACAAGTGATGCAGCAATTGAGCAGTGAGGTGAGTGGTGTGTTGCAAGATGGAGGGAAGAGTCCATGGGAGAAAAAGCAGTGGATGAAGAAAAGGGCTTTGCAGTTGGAGGAGCAACAAGTAGGTTATCAAGTGGAGGCCTTTGAGCTTGAAAAGCAGAGGTTGAAATGGACCAAGTATAGCAGCAAGAAGGAGAGGGAATTGGAGAGACACAAACTTGAAAATGAATGGAGGAGGTTGGAAATTGAAAGAATGGTTCTGCTACTCCGCCAGAAGGAGCTTGACTTACTGAATATTCAGCAACAGCAGCAACAGCAGCAACAGCAACATTCTTCTACCTAG 1380 0.45 MEPNGLGGGIYPSISSGLLGVENPLKQQQNLQNQHNPLPLQMVSYATHHDSADTHISQPIKHGYPYNSGKTNKPQTQTTLSDEDDPGFTADDSSVDPKRKVSPWHRMKWTDAMVRLLIMAVYYIGDEAGSEGTDPTGKKKATGLLQKKGKWKSVSRGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQSLLDTMDLSPKMKEEARKLLNSKHLFFREMCAYHNSCGHGSTSNVHQSTEGGTEAHPQHQQQQQTQPQQQRCSHSSENGVGSLRMLKGRSGEEDEDEDEDDDWDDTSEEEEEESGEGGSKGQVEELDESDVMRKRPRKGGFCVSSKSQVMQQLSSEVSGVLQDGGKSPWEKKQWMKKRALQLEEQQVGYQVEAFELEKQRLKWTKYSSKKERELERHKLENEWRRLEIERMVLLLRQKELDLLNIQQQQQQQQQQHSST. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04747 459 Coils Coil 435 455 - -
Seca2g04747 459 MobiDBLite consensus disorder prediction 50 100 - -
Seca2g04747 459 PANTHER F16F4.11 PROTEIN-RELATED 1 446 - -
Seca2g04747 459 Gene3D - 109 183 - -
Seca2g04747 459 MobiDBLite consensus disorder prediction 239 346 - -
Seca2g04747 459 Coils Coil 409 429 - -
Seca2g04747 459 MobiDBLite consensus disorder prediction 292 315 - -
Seca2g04747 459 MobiDBLite consensus disorder prediction 64 84 - -
Seca2g04747 459 MobiDBLite consensus disorder prediction 316 337 - -
Seca2g04747 459 Pfam Myb/SANT-like DNA-binding domain 106 232 IPR044822 -
Seca2g04747 459 MobiDBLite consensus disorder prediction 239 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04747 Seca-Chr2 133730725 133732104 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca2g04747 Myb_DNA-bind_4 3.7e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04747 - - gmx:547619 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04747 2 133730725 133732104 Seca2g04747 2 133730725 133732104 ECH
Seca8g05241 8 142879942 142882054 Seca2g04747 2 133730725 133732104 PCT