LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g04745	ATGGCAAATCGTTTTGATTTAATCAAAGATATTAATGCTGCTTCTGAACAGAAGGTTTGGAGAATTAAAGTTAGAGTTATTCGGCAATGGAGATCTGCTAATTTTAAAGATTCTTCCCATAAACCTATGATTGAAATGGTTGTTTTGGATGAAGAGGGAGGTCGTATCCAGTGCACTGTGAAGAGCATTCATGTCTATTTGTTTGAGGGTATTGTCCTGGAAGGCAATGTTTACATGATTGAAAACGTTTCTGTTGCACTTAATAGTGCGAAGTTCAAACCAACAGTGCATGAATTTCGACTGTTTTTCAAGAGAGAAACACAAGTTCGTATGATTGAGGATTCTAACATTCCAACAAATGGTTTTTGTTTTGTCCCATTTACTGATATTCTGAACATAAAGAATGATGAAAGTCGCTTGGTTGGTAAGATGTATTTCATTATAAAATATATCAATATATTGAACCAATTTATTTTATAA	480	0.3333	MANRFDLIKDINAASEQKVWRIKVRVIRQWRSANFKDSSHKPMIEMVVLDEEGGRIQCTVKSIHVYLFEGIVLEGNVYMIENVSVALNSAKFKPTVHEFRLFFKRETQVRMIEDSNIPTNGFCFVPFTDILNIKNDESRLVGKMYFIIKYINILNQFIL.	160

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g04745	159	Gene3D	-	7	115	IPR012340	-
	Seca2g04745	159	Pfam	Domain of unknown function DUF223	45	133	IPR003871	-
	Seca2g04745	159	FunFam	Replication protein A subunit	6	114	-	-
	Seca2g04745	159	CDD	RPA1_DBD_A_like	21	109	-	-
	Seca2g04745	159	SUPERFAMILY	Nucleic acid-binding proteins	5	114	IPR012340	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g04745	Seca-Chr2	133704424	133704996	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g04745	17	136	Core DNA Replication Machinery Family	AT2G06510	29.134	7.45e-08	48.9

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g04745	-		-	adu:110274503	168.703

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