Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04744 ATGGAGTTGAAGGGAAGAGACAGGAAAGTAGTGAAGGCAGACATGGATTGGAATCACAACTCAAGACACTTGGTTCCTCGGGCAGAGTCTTCCTTAAGCTTCCTCTGCCACTATAACAACAACCCATATTCAGGAATGGAAATGAAACAACCGGTGTTAGGAGAGACAGCAGAAAGGTTGCTTCCAGCAATGGAGAAAATGGAGAATGGAAGCCGGGAGAAGAAGAAGAGATTAACAAATTACCAGATTGAGTTACTTGAGAGGAGTTTCCAAGAAGAGATAAAGTTGGATCCTGAAAGGAAAATGAAGCTTTCAAAGGAGCTAGGACTCCCACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGACGTACAAGGTGGAAGGCCAAGCAGCTTGAGCACTTGTATGATGTGCTTAAACACGAATTTGATGCCATCTGCAAGGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAAGGCTAAGAGAGCAAGCTTTCAGGACACAAACATTTGCTGGTTATACAGAAATCTCTGGGGAAGAAACAGTAGAAAGCACATCAGAGGCGGTGCGTGGTTGTGGTTCCAAGAAGTCACAAGGAACTAGTAACATTCAGCAGGCTACAGAGGCAGAGGGATACTGTTGTTTCACTGTGGAAGATTATAACTCAGTTTCAATGGCTCAGTACCATTGGCCTGTTGTGCCTTATAATCTGTGA 723 0.4398 MELKGRDRKVVKADMDWNHNSRHLVPRAESSLSFLCHYNNNPYSGMEMKQPVLGETAERLLPAMEKMENGSREKKKRLTNYQIELLERSFQEEIKLDPERKMKLSKELGLPPRQIAVWFQNRRTRWKAKQLEHLYDVLKHEFDAICKEKQKLQEEVMKLKARLREQAFRTQTFAGYTEISGEETVESTSEAVRGCGSKKSQGTSNIQQATEAEGYCCFTVEDYNSVSMAQYHWPVVPYNL. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04744 240 CDD homeodomain 72 130 IPR001356 GO:0003677
Seca2g04744 240 Coils Coil 135 169 - -
Seca2g04744 240 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Seca2g04744 240 PRINTS Lambda-repressor HTH signature 100 109 IPR000047 GO:0003677
Seca2g04744 240 PRINTS Lambda-repressor HTH signature 109 125 IPR000047 GO:0003677
Seca2g04744 240 SMART HOX_1 71 133 IPR001356 GO:0003677
Seca2g04744 240 Coils Coil 64 84 - -
Seca2g04744 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 65 201 IPR045224 GO:0003700
Seca2g04744 240 FunFam Putative homeobox-leucine zipper protein ATHB-51 71 134 - -
Seca2g04744 240 Pfam Homeobox associated leucine zipper 129 163 IPR003106 GO:0006355|GO:0043565
Seca2g04744 240 Gene3D - 64 135 - -
Seca2g04744 240 Pfam Homeodomain 72 127 IPR001356 GO:0003677
Seca2g04744 240 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Seca2g04744 240 SUPERFAMILY Homeodomain-like 66 131 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04744 Seca-Chr2 133695134 133696711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04744 69 167 Homeobox Transcription Factor Family AT2G36610 60.748 4.31e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca2g04744 Homeodomain 6.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04744 - - ccaj:109798071 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04744 2 133695134 133696711 Seca2g04744 2 133695134 133696711 ECH
Seca2g04744 2 133695134 133696711 Seca8g05242 8 142898663 142901140 PCT