Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04723 ATGGACAACAATGATGACAAAATCATATTAGGCACACATGCGAGTCACCTTGTTATCTGTGCTGTTGCCACAATCTGTTTCGTTCTAGCAACAGTAGCATGTTATATCATTCTCTTCAGGTATTTCTATAGGTCTCCAAGAGTAGTACAACAGAGGAACAACAAGAGTGGTGGTGTGAAAGAGGAAATCCTCAACAAGATCCCAACTCTCCCATTCTCAACCCAAAAATTTGATGTCTTTCGTTTGGAACAAAATGAATGCTCCATTTGCCTTGGTGAATTGGAGGATGGAGAGCCAGTGAGGTTGTTACCTGCTTGTAAACATGCCTTCCACCCTTTTTGCATTGAATCATGGTTCATTGAACATGCAAATTGCCCTGTTTGTCGTTCACCGATTACTTGTGATTGTGAATTAAGGCTTCCAATAGCTTTAGAAAATGATCATGGTGGTGGAGAACGGAGGATCTCGTCAAATGATGATCATCATCATCGGTTAATCAATGGTGATGTGAGTGATTCCACTTCCACCTCCTCAAGATTTCAACGACCACACCGTTTATTGCTTCACTCTGTCTCTTTCTCATCATCACGCATTCAGCAAAAGCCACGAGCTCTGGATAGTTGGTTGAACAGGTCCTTATCTGTGAATCAGTCATCTTTATATATTGCCATTACCATACATGGAGATCATGAAATTGCTTCTACTTCTTCTATTGGTTGTGATGAATTGGATCAAGATCATTTAGTGTGTGTTTAA 756 0.4048 MDNNDDKIILGTHASHLVICAVATICFVLATVACYIILFRYFYRSPRVVQQRNNKSGGVKEEILNKIPTLPFSTQKFDVFRLEQNECSICLGELEDGEPVRLLPACKHAFHPFCIESWFIEHANCPVCRSPITCDCELRLPIALENDHGGGERRISSNDDHHHRLINGDVSDSTSTSSRFQRPHRLLLHSVSFSSSRIQQKPRALDSWLNRSLSVNQSSLYIAITIHGDHEIASTSSIGCDELDQDHLVCV. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04723 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 134 IPR013083 -
Seca2g04723 251 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Seca2g04723 251 MobiDBLite consensus disorder prediction 151 178 - -
Seca2g04723 251 SMART ring_2 87 128 IPR001841 -
Seca2g04723 251 MobiDBLite consensus disorder prediction 151 168 - -
Seca2g04723 251 SUPERFAMILY RING/U-box 79 135 - -
Seca2g04723 251 Pfam Ring finger domain 85 129 IPR001841 -
Seca2g04723 251 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Seca2g04723 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04723 Seca-Chr2 133471417 133473349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04723 15 129 C3H Transcription Factor Family AT3G10910 31.008 1.51e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04723 - - aprc:113863869 212.231