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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Seca2g04718
ATGGATGCCGCCGTCAAGCCGGAATCCGAATCCGCAACGCGGAAAGTTTGCGTGGTTAATGGTTACATTGTTTACACTCGAGCGAAGAGGTCCTTAAATTCGTGTAACGGTTTTTCCGAGGATGGAGAATTCAAGAGATTCAAGTCAAATGCGGAGGTTCCGGTTAAAACGGAGAACGGAGTGGATTGTTGCACGGGAGGAAGAGATGGCGTGTGTGATGAGATGAAGAGCGAGAACAAAGAGGTTGATGAGGTGAGGACGTTCAAGCGGAATACGCGATCGACGTTGAAAGCAAATGTTGTTGAGTCTGGTGGTGAGAAGATAGGGAGTGAGCTAGAACAAGGTGGTGCTCCTGTTGCGAATGGTAAAACTGATGGTGGAACTCGAAGAAGCAAGTTGGAGTTGAAGATGTCGAAGAAGATTGTGGTTAACAGGAAGCCCATGACTGTGAAGGAGCTCTTTGATACAGGTTTACTTGATGGAGTCTCTGTAGTTTACATGGGCGGCATTAAGAAGGCTTCAGGATTACGGGGTGTTATTAAGGATGGAGGAATATTGTGCTCGTGCTGTCTGTGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCAGCTCAGTATATTTGCCTCGAAAATGGGAAGAGCCTGCTTGATTTATTGAGAGCATGCAGGGGAGCTCCCCTGCATAATTTGGATACGACAGTTCAAAATTTTGTTTGTTCCCCAGCCGAAGAAAAATATTTTACATGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCCTGTGTGGAAAGAGTGGGGCCTATATGCTGTTCTTGTGTGGAATCAAGGAAATCTGAAGAAAGTTCGAATAATGTAGTTGGCAAAAGAGTCAGGTTAACCATTTCGTCTCCTAGACCAGTGTCATTCTCCAGTCCATCCAGTACTTCCAAGCAATCTGTCTCCTCAAAAATAAAGAGACCTTGGAAGAAAAGAACGAAGTCATCAAAAAGGGTTAGCAGCTCAAATTCTTCAAAGAGTGCTTCTGTGCCTATTCTACCCCGGAATAAAATTTTGTGGAAGACGAAAAAGAAGTTTGTGTCAGTGTCGGTAAAGTTGAAGACCCCAAAAATCTCTTCAAATTCAAAAAGTTTATCCTCACAAAATAAGAGTCAGTGGAAGATAACTAAGAAGGACCAGCGGTTGCATAAGTTAGTTTTTGAGGAAGATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGTGGACAGAAGTTGCTTGAAGGTTTTAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGTGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGTTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACGTCAAATGGGGTGTCTCTCCATGAGTTAGCAATATCGCTCTCAAAAGATCGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCAAGCATTCCCCGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCACACAATGCCAATGCTATGGCAGCTGGAAGGATTGAAGGAGTTGATCCTATTGAACAGATAACCAATAGATGCATTCGCATAGTCAAAGACATTGAAGGGGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTTAGCAGATCTGGCTTTGGTCCACGCACAATAATAATCTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAATTGCCGGAAGGGAATTGGCTCTGTTGCAATGATTGCACGAGAATACATTCTACTTTGGAGAACCTTTTGGTTAAGGGGGCTGAGAGACTTCCTGAGTCTCTCTTGAATGTTATAAAGAAAAAGCAAGAGGAAAAAGGATTAGATCCCATCAACGATGTTGATGTAACATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTCAATCCTATAGTCGATGCAGCTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGAAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTACGTATTTTTGGCACGGATATTGCTGAACTTCCTTTAGTTGCAACAAGTAACAGGAACCATGGGAAGGGCTACTTCCAAACACTCTTCTCCTGCATTGAGAGGCTCTTGGCTTTCTTGAATGTTAAGAACCTTGTGCTGCCAGCTGCAGAAGAAGCAGAATCCATATGGACAGATAAATTTGGGTTTAGCAAGGTGAAACCGGACCAGCTTGCCAACTATAGAAAGAACTGCAATCAGATGGTGACATTCAAAGGGACAAATATGCTTCATAAAATGGTGCCTCCATGTCGAGTCATCAATAATCAATCATGA
2595
0.4335
MDAAVKPESESATRKVCVVNGYIVYTRAKRSLNSCNGFSEDGEFKRFKSNAEVPVKTENGVDCCTGGRDGVCDEMKSENKEVDEVRTFKRNTRSTLKANVVESGGEKIGSELEQGGAPVANGKTDGGTRRSKLELKMSKKIVVNRKPMTVKELFDTGLLDGVSVVYMGGIKKASGLRGVIKDGGILCSCCLCNGRRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRACRGAPLHNLDTTVQNFVCSPAEEKYFTCKRCKGCFPSSCVERVGPICCSCVESRKSEESSNNVVGKRVRLTISSPRPVSFSSPSSTSKQSVSSKIKRPWKKRTKSSKRVSSSNSSKSASVPILPRNKILWKTKKKFVSVSVKLKTPKISSNSKSLSSQNKSQWKITKKDQRLHKLVFEEDGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTVVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAHNANAMAAGRIEGVDPIEQITNRCIRIVKDIEGELSGCALCRGVDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVKGAERLPESLLNVIKKKQEEKGLDPINDVDVTWRLLNGKIASPETRPLLLEAVSIFHECFNPIVDAASGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNRNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKVKPDQLANYRKNCNQMVTFKGTNMLHKMVPPCRVINNQS.
865
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Seca2g04718
864
CDD
PHD1_AIRE
498
538
-
-
Seca2g04718
864
ProSiteProfiles
Zinc finger PHD-type profile.
496
541
IPR019787
-
Seca2g04718
864
SUPERFAMILY
Acyl-CoA N-acyltransferases (Nat)
742
827
IPR016181
-
Seca2g04718
864
PANTHER
AUTOIMMUNE REGULATOR
42
853
-
-
Seca2g04718
864
Gene3D
Zinc/RING finger domain, C3HC4 (zinc finger)
584
645
IPR013083
-
Seca2g04718
864
SUPERFAMILY
FYVE/PHD zinc finger
579
640
IPR011011
-
Seca2g04718
864
SUPERFAMILY
FYVE/PHD zinc finger
485
543
IPR011011
-
Seca2g04718
864
MobiDBLite
consensus disorder prediction
307
325
-
-
Seca2g04718
864
FunFam
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
485
562
-
-
Seca2g04718
864
ProSitePatterns
Zinc finger PHD-type signature.
499
538
IPR019786
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Seca2g04718
Seca-Chr2
133400642
133413573
Dispersed/Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Seca2g04718
139
861
PHD Transcription Factor Family
AT2G36720
54.274
0.0
813
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TR
PHD
Seca2g04718
TDBD
4.1e-14
No_clan
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Seca2g04718
-
-
gmx:100802562
1377.84
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Seca2g04718
2
133400642
133413573
Seca2g04718
2
133400642
133413573
ECH
Seca8g05269
8
143239495
143245399
Seca2g04718
2
133400642
133413573
PCT
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