Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04718 ATGGATGCCGCCGTCAAGCCGGAATCCGAATCCGCAACGCGGAAAGTTTGCGTGGTTAATGGTTACATTGTTTACACTCGAGCGAAGAGGTCCTTAAATTCGTGTAACGGTTTTTCCGAGGATGGAGAATTCAAGAGATTCAAGTCAAATGCGGAGGTTCCGGTTAAAACGGAGAACGGAGTGGATTGTTGCACGGGAGGAAGAGATGGCGTGTGTGATGAGATGAAGAGCGAGAACAAAGAGGTTGATGAGGTGAGGACGTTCAAGCGGAATACGCGATCGACGTTGAAAGCAAATGTTGTTGAGTCTGGTGGTGAGAAGATAGGGAGTGAGCTAGAACAAGGTGGTGCTCCTGTTGCGAATGGTAAAACTGATGGTGGAACTCGAAGAAGCAAGTTGGAGTTGAAGATGTCGAAGAAGATTGTGGTTAACAGGAAGCCCATGACTGTGAAGGAGCTCTTTGATACAGGTTTACTTGATGGAGTCTCTGTAGTTTACATGGGCGGCATTAAGAAGGCTTCAGGATTACGGGGTGTTATTAAGGATGGAGGAATATTGTGCTCGTGCTGTCTGTGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCAGCTCAGTATATTTGCCTCGAAAATGGGAAGAGCCTGCTTGATTTATTGAGAGCATGCAGGGGAGCTCCCCTGCATAATTTGGATACGACAGTTCAAAATTTTGTTTGTTCCCCAGCCGAAGAAAAATATTTTACATGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCCTGTGTGGAAAGAGTGGGGCCTATATGCTGTTCTTGTGTGGAATCAAGGAAATCTGAAGAAAGTTCGAATAATGTAGTTGGCAAAAGAGTCAGGTTAACCATTTCGTCTCCTAGACCAGTGTCATTCTCCAGTCCATCCAGTACTTCCAAGCAATCTGTCTCCTCAAAAATAAAGAGACCTTGGAAGAAAAGAACGAAGTCATCAAAAAGGGTTAGCAGCTCAAATTCTTCAAAGAGTGCTTCTGTGCCTATTCTACCCCGGAATAAAATTTTGTGGAAGACGAAAAAGAAGTTTGTGTCAGTGTCGGTAAAGTTGAAGACCCCAAAAATCTCTTCAAATTCAAAAAGTTTATCCTCACAAAATAAGAGTCAGTGGAAGATAACTAAGAAGGACCAGCGGTTGCATAAGTTAGTTTTTGAGGAAGATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGTGGACAGAAGTTGCTTGAAGGTTTTAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGTGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGTTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACGTCAAATGGGGTGTCTCTCCATGAGTTAGCAATATCGCTCTCAAAAGATCGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCAAGCATTCCCCGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCACACAATGCCAATGCTATGGCAGCTGGAAGGATTGAAGGAGTTGATCCTATTGAACAGATAACCAATAGATGCATTCGCATAGTCAAAGACATTGAAGGGGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTTAGCAGATCTGGCTTTGGTCCACGCACAATAATAATCTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAATTGCCGGAAGGGAATTGGCTCTGTTGCAATGATTGCACGAGAATACATTCTACTTTGGAGAACCTTTTGGTTAAGGGGGCTGAGAGACTTCCTGAGTCTCTCTTGAATGTTATAAAGAAAAAGCAAGAGGAAAAAGGATTAGATCCCATCAACGATGTTGATGTAACATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTCAATCCTATAGTCGATGCAGCTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGAAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTACGTATTTTTGGCACGGATATTGCTGAACTTCCTTTAGTTGCAACAAGTAACAGGAACCATGGGAAGGGCTACTTCCAAACACTCTTCTCCTGCATTGAGAGGCTCTTGGCTTTCTTGAATGTTAAGAACCTTGTGCTGCCAGCTGCAGAAGAAGCAGAATCCATATGGACAGATAAATTTGGGTTTAGCAAGGTGAAACCGGACCAGCTTGCCAACTATAGAAAGAACTGCAATCAGATGGTGACATTCAAAGGGACAAATATGCTTCATAAAATGGTGCCTCCATGTCGAGTCATCAATAATCAATCATGA 2595 0.4335 MDAAVKPESESATRKVCVVNGYIVYTRAKRSLNSCNGFSEDGEFKRFKSNAEVPVKTENGVDCCTGGRDGVCDEMKSENKEVDEVRTFKRNTRSTLKANVVESGGEKIGSELEQGGAPVANGKTDGGTRRSKLELKMSKKIVVNRKPMTVKELFDTGLLDGVSVVYMGGIKKASGLRGVIKDGGILCSCCLCNGRRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRACRGAPLHNLDTTVQNFVCSPAEEKYFTCKRCKGCFPSSCVERVGPICCSCVESRKSEESSNNVVGKRVRLTISSPRPVSFSSPSSTSKQSVSSKIKRPWKKRTKSSKRVSSSNSSKSASVPILPRNKILWKTKKKFVSVSVKLKTPKISSNSKSLSSQNKSQWKITKKDQRLHKLVFEEDGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTVVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAHNANAMAAGRIEGVDPIEQITNRCIRIVKDIEGELSGCALCRGVDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVKGAERLPESLLNVIKKKQEEKGLDPINDVDVTWRLLNGKIASPETRPLLLEAVSIFHECFNPIVDAASGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNRNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKVKPDQLANYRKNCNQMVTFKGTNMLHKMVPPCRVINNQS. 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04718 864 CDD PHD1_AIRE 498 538 - -
Seca2g04718 864 ProSiteProfiles Zinc finger PHD-type profile. 496 541 IPR019787 -
Seca2g04718 864 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 742 827 IPR016181 -
Seca2g04718 864 PANTHER AUTOIMMUNE REGULATOR 42 853 - -
Seca2g04718 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 584 645 IPR013083 -
Seca2g04718 864 SUPERFAMILY FYVE/PHD zinc finger 579 640 IPR011011 -
Seca2g04718 864 SUPERFAMILY FYVE/PHD zinc finger 485 543 IPR011011 -
Seca2g04718 864 MobiDBLite consensus disorder prediction 307 325 - -
Seca2g04718 864 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 485 562 - -
Seca2g04718 864 ProSitePatterns Zinc finger PHD-type signature. 499 538 IPR019786 -
Seca2g04718 864 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 583 645 - -
Seca2g04718 864 Pfam PHD-finger 499 540 IPR019787 -
Seca2g04718 864 SMART PHD_3 498 539 IPR001965 -
Seca2g04718 864 SMART PHD_3 586 643 IPR001965 -
Seca2g04718 864 Pfam Tify domain binding domain 436 482 IPR032308 -
Seca2g04718 864 Pfam Tify domain binding domain 178 233 IPR032308 -
Seca2g04718 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 573 IPR013083 -
Seca2g04718 864 MobiDBLite consensus disorder prediction 307 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04718 Seca-Chr2 133400642 133413573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04718 139 861 PHD Transcription Factor Family AT2G36720 54.274 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca2g04718 TDBD 4.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04718 - - gmx:100802562 1377.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04718 2 133400642 133413573 Seca2g04718 2 133400642 133413573 ECH
Seca8g05269 8 143239495 143245399 Seca2g04718 2 133400642 133413573 PCT