Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04717 ATGAGATTCAACAGAACCCTCTTTTGGCTTTTTGGCTTAGTCATCTTTATCTTTTCTATCATAATTGTACATTACACCACGACACCTTCCACCACCACTACTTCTACCATTAGTCCTCAAGATAGTAGCACATTTAATTTTCAACTTGGTATATTTAGCAAGATTATAAAGCTTAGTGGTGCACAAGACTTTGTGTCTTTGCTAACAAGTATTGCAAGGGGGAGACACCATCACCCCAAGAGGGAAAAGGACAAATGTGACAATGCCAAATGGGCTTCCAAGCTAATTTCAGACTACAATGTGGCTCTTGTTTTCACAGTTGACTTAAAGGGCTGTGGTAACTTCAGTAGTGTGCAGAAAGCAGTTGATGCTGTCCCTGAATCTACCTCTGATACCACCCTTATCATAATTGACTCTGGTACTTACAGGGAAAAGGTAGTGGTTCAGGCCAACAAAACAAACTTGATACTTCAGGGTCAAGGGTATCTTAATACAATCATAGAATGGAATGACACTGCAAATTCCACTGGTGGAACTTCCTATAGTTACTCATTTGCCGTATTTGCTTCTAAGTTCACTGCTTACAACATTAGCTTTAAGAACACTGCCCCTCCACCATCACCAGGAGAAGTTGGTGCACAGGCAGTGGCATTGAGAGTGACAGGTGATCAAGTTGCATTCTATGGATGTGGGTTTTATGGAGCACAGGACACACTCAATGATGACAGTGGGAGACATTACTTTAAAGAATGTTTCATCCAAGGATCCATTGATTTCATATTTGGAAATGGTAGATCACTTTATGAGGATTGTACCATAAACTCAATAGCAAAAGAAGATAGAAATGATTTAGGGGTTAGCGGGTCGATTACAGCACAAGGGCGGCAATCAATGAAGGAGGAAACAGGGTTTTCATTTGTGAATTGTAGCATTGTTGGGAGTGGGAAAGTGTGGCTTGGAAGAGCATGGGGAGCCTCTGCCACTGTGGTCTTCTCAAAAACTTATATGTCTGATGTTGTTGCTGCTGAAGGATGGAACGATTGGAGAGACCCCTCTAGAGACCAGAGCGTGTTTTTTGGGGAGTACCATTGCTTGGGAGCAGGAGCAAATTATTCATCTAGTGTGTCTTATGCGAAGCAACTAAGGGATTACGAAGCAATTTCCTACTTGAATATTTCGTACATAAATGGAGATGATTGGCTTCTTAATTATTTTCAAGACCATGTTGACCATTCATATACTACATAG 1248 0.4111 MRFNRTLFWLFGLVIFIFSIIIVHYTTTPSTTTTSTISPQDSSTFNFQLGIFSKIIKLSGAQDFVSLLTSIARGRHHHPKREKDKCDNAKWASKLISDYNVALVFTVDLKGCGNFSSVQKAVDAVPESTSDTTLIIIDSGTYREKVVVQANKTNLILQGQGYLNTIIEWNDTANSTGGTSYSYSFAVFASKFTAYNISFKNTAPPPSPGEVGAQAVALRVTGDQVAFYGCGFYGAQDTLNDDSGRHYFKECFIQGSIDFIFGNGRSLYEDCTINSIAKEDRNDLGVSGSITAQGRQSMKEETGFSFVNCSIVGSGKVWLGRAWGASATVVFSKTYMSDVVAAEGWNDWRDPSRDQSVFFGEYHCLGAGANYSSSVSYAKQLRDYEAISYLNISYINGDDWLLNYFQDHVDHSYTT. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04717 415 Gene3D - 99 407 IPR012334 -
Seca2g04717 415 ProSitePatterns Pectinesterase signature 2. 253 262 IPR033131 -
Seca2g04717 415 Pfam Pectinesterase 107 398 IPR000070 GO:0030599|GO:0042545
Seca2g04717 415 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 93 401 - -
Seca2g04717 415 FunFam Pectinesterase 99 406 - -
Seca2g04717 415 SUPERFAMILY Pectin lyase-like 101 402 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04717 Seca-Chr2 133392182 133395179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04717 80 401 Carbohydrate Esterase AT1G05310 53.395 5.93e-117 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04717 - - gmx:100802034 688.337