Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g04702 | ATGCAGCAGGACCAAGAGGAACATGTGGTGTGCAGAGATAGTAATAATTACATGCAAATCATCAAGGGGAAGCGCACAAAGCGTCAAAGGCTACCATCCCCACTTAGATTAGCCATGTCAACATCTTCAAGAAGCAGCACTACTGAAAATTCAGGAGGATTTGATCATGCTACAACCTCAAATGTTGATGAATTCAAGAACAGGACAGAAGAAGAGGAGGATATGGCTAATTGTTTGATTCTATTGGCACAAGGCAATCATACCCAGAAAAAAGCATCAAATTCATCACAACAACATGTAGCTGCATCTAACAAAAAAGCAGGGCTTTTTCTTTACCAGTGCAAGACTTGTAACAGATGTTTCCCTTCATTCCAAGCACTTGGTGGGCACAGAGCAAGTCACAAGAAACCAAAGGCAAATACAGAAGAAAAACAAACAGTTAATACTAGTTTTGTGAATGATTATGGTGACCCCACAAACACAAACCTTACTTTACAATTATCAACTAGCAAGGCTTTGTGTAGAAACAATACTATGACTACTACAACTCCTAATACTAAATCAAAAGTTCATGAGTGTTCTATATGTGGGGCTGAATTCACATCTGGGCAAGCCTTAGGGGGACATATGAGGAGGCATAGAACTGTTTTGAATATGTCTGCAGCTACAACAATATCTATGAATAGTGATCATGGGAGCCCTGAAATCCAAGAAGCCAAGAAACCCAGAAATGTTTTGAAGTTGGACTTGAATCTTCCTGCTGCACCTGAGGATGATAACAGAGAATCAAAGTTTCCGTTTCAGTCCAAAGAAAAAGTTATTGTCTTCTCTGCAACGTCCTTGGTGGATTGTCATTACTAA | 861 | 0.3972 | MQQDQEEHVVCRDSNNYMQIIKGKRTKRQRLPSPLRLAMSTSSRSSTTENSGGFDHATTSNVDEFKNRTEEEEDMANCLILLAQGNHTQKKASNSSQQHVAASNKKAGLFLYQCKTCNRCFPSFQALGGHRASHKKPKANTEEKQTVNTSFVNDYGDPTNTNLTLQLSTSKALCRNNTMTTTTPNTKSKVHECSICGAEFTSGQALGGHMRRHRTVLNMSAATTISMNSDHGSPEIQEAKKPRNVLKLDLNLPAAPEDDNRESKFPFQSKEKVIVFSATSLVDCHY. | 287 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g04702 | 286 | SUPERFAMILY | beta-beta-alpha zinc fingers | 112 | 213 | IPR036236 | - | |
Seca2g04702 | 286 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 114 | 134 | IPR013087 | - | |
Seca2g04702 | 286 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 44 | 270 | - | - | |
Seca2g04702 | 286 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 112 | 139 | IPR013087 | - | |
Seca2g04702 | 286 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 193 | 213 | IPR013087 | - | |
Seca2g04702 | 286 | Gene3D | Classic Zinc Finger | 109 | 213 | - | - | |
Seca2g04702 | 286 | MobiDBLite | consensus disorder prediction | 35 | 60 | - | - | |
Seca2g04702 | 286 | Pfam | C2H2-type zinc finger | 190 | 215 | - | - | |
Seca2g04702 | 286 | Pfam | C2H2-type zinc finger | 112 | 137 | - | - | |
Seca2g04702 | 286 | SMART | c2h2final6 | 112 | 134 | IPR013087 | - | |
Seca2g04702 | 286 | SMART | c2h2final6 | 191 | 213 | IPR013087 | - | |
Seca2g04702 | 286 | MobiDBLite | consensus disorder prediction | 23 | 61 | - | - | |
Seca2g04702 | 286 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 191 | 213 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g04702 | Seca-Chr2 | 133188183 | 133189043 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g04702 | 19 | 286 | C2H2 Transcription Factor Family | AT2G28200 | 44.755 | 4.25e-62 | 196 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca2g04702 | zf-C2H2_6 | 1.3e-12 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g04702 | - | - | ccaj:109798139 | 306.99 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca2g04702 | 2 | 133188183 | 133189043 | Seca8g05289 | 8 | 143512798 | 143514180 | ECH | |
Seca2g04702 | 2 | 133188183 | 133189043 | Seca2g04702 | 2 | 133188183 | 133189043 | ECH | |
Seca2g04702 | 2 | 133188183 | 133189043 | Seca4g04197 | 4 | 75434033 | 75434917 | ECH | |
Seca8g05289 | 8 | 143512798 | 143514180 | Seca2g04702 | 2 | 133188183 | 133189043 | PCT |