Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04702 ATGCAGCAGGACCAAGAGGAACATGTGGTGTGCAGAGATAGTAATAATTACATGCAAATCATCAAGGGGAAGCGCACAAAGCGTCAAAGGCTACCATCCCCACTTAGATTAGCCATGTCAACATCTTCAAGAAGCAGCACTACTGAAAATTCAGGAGGATTTGATCATGCTACAACCTCAAATGTTGATGAATTCAAGAACAGGACAGAAGAAGAGGAGGATATGGCTAATTGTTTGATTCTATTGGCACAAGGCAATCATACCCAGAAAAAAGCATCAAATTCATCACAACAACATGTAGCTGCATCTAACAAAAAAGCAGGGCTTTTTCTTTACCAGTGCAAGACTTGTAACAGATGTTTCCCTTCATTCCAAGCACTTGGTGGGCACAGAGCAAGTCACAAGAAACCAAAGGCAAATACAGAAGAAAAACAAACAGTTAATACTAGTTTTGTGAATGATTATGGTGACCCCACAAACACAAACCTTACTTTACAATTATCAACTAGCAAGGCTTTGTGTAGAAACAATACTATGACTACTACAACTCCTAATACTAAATCAAAAGTTCATGAGTGTTCTATATGTGGGGCTGAATTCACATCTGGGCAAGCCTTAGGGGGACATATGAGGAGGCATAGAACTGTTTTGAATATGTCTGCAGCTACAACAATATCTATGAATAGTGATCATGGGAGCCCTGAAATCCAAGAAGCCAAGAAACCCAGAAATGTTTTGAAGTTGGACTTGAATCTTCCTGCTGCACCTGAGGATGATAACAGAGAATCAAAGTTTCCGTTTCAGTCCAAAGAAAAAGTTATTGTCTTCTCTGCAACGTCCTTGGTGGATTGTCATTACTAA 861 0.3972 MQQDQEEHVVCRDSNNYMQIIKGKRTKRQRLPSPLRLAMSTSSRSSTTENSGGFDHATTSNVDEFKNRTEEEEDMANCLILLAQGNHTQKKASNSSQQHVAASNKKAGLFLYQCKTCNRCFPSFQALGGHRASHKKPKANTEEKQTVNTSFVNDYGDPTNTNLTLQLSTSKALCRNNTMTTTTPNTKSKVHECSICGAEFTSGQALGGHMRRHRTVLNMSAATTISMNSDHGSPEIQEAKKPRNVLKLDLNLPAAPEDDNRESKFPFQSKEKVIVFSATSLVDCHY. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04702 286 SUPERFAMILY beta-beta-alpha zinc fingers 112 213 IPR036236 -
Seca2g04702 286 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Seca2g04702 286 PANTHER ZINC FINGER PROTEIN ZAT5 44 270 - -
Seca2g04702 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Seca2g04702 286 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Seca2g04702 286 Gene3D Classic Zinc Finger 109 213 - -
Seca2g04702 286 MobiDBLite consensus disorder prediction 35 60 - -
Seca2g04702 286 Pfam C2H2-type zinc finger 190 215 - -
Seca2g04702 286 Pfam C2H2-type zinc finger 112 137 - -
Seca2g04702 286 SMART c2h2final6 112 134 IPR013087 -
Seca2g04702 286 SMART c2h2final6 191 213 IPR013087 -
Seca2g04702 286 MobiDBLite consensus disorder prediction 23 61 - -
Seca2g04702 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 213 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04702 Seca-Chr2 133188183 133189043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04702 19 286 C2H2 Transcription Factor Family AT2G28200 44.755 4.25e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g04702 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04702 - - ccaj:109798139 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04702 2 133188183 133189043 Seca8g05289 8 143512798 143514180 ECH
Seca2g04702 2 133188183 133189043 Seca2g04702 2 133188183 133189043 ECH
Seca2g04702 2 133188183 133189043 Seca4g04197 4 75434033 75434917 ECH
Seca8g05289 8 143512798 143514180 Seca2g04702 2 133188183 133189043 PCT