Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04701 ATGCCGATCAGAAACATCGCCGTCGGTAGCCCTCAGGAGGCAACTCACCCAGACACCTTGAAGGCAGCGTTGGCTGAGTTCATCTCCACCTTCATCTTCGTCTTCGCCGGTTCCGGCAGTGGCATCGCCTACAACAAGCTCACCAGCGACGGCGCCGCAACTCCCGCCGGACTCATCTCCGCCTCCATCGCCCATGCATTCGCCCTTTTTGTCGCTGTCTCCGTCGGCGCCAACATCTCCGGCGGCCACGTCAACCCTGCCGTGACCTTCGGTCTCTTCGTCGGTGGCAACATCACCTTCCTCCGCGGTATCGTCTACATCATCGCTCAGCTCCTCGGTTCCATCGTCGCCTCCTTGCTCCTCCTCTTCGTCACCGGAATGCAGTCTGTTCCAGCATTCGGACTCTCCGCTGGAGTTGGAGTAGGGAACGCTTTGGTGTTGGAGATCGTGATGACCTTTGGATTGGTGTACACAGTGTACGCAACCGCCGTAGATCCCAAGAAGGGTAGTTTGGGAACTATTGCCCCCATCGCTATTGGTTTCATCGTTGGTGCTAACATTTTATTGGGTGGGGCCTTTGACGGAGCATCCATGAACCCGGCTGTGTCATTCGGACCCGCCGTTGTGAGCTGGAGCTGGGCCAACCACTGGATCTACTGGGTTGGGCCTCTTGTTGGTGGTGCCATTGCTGGGCTTATCTACGAATTCGTCTTCATCAACCAAAGCCACGAGCAACTCCCTACCACTGACTACTAG 756 0.5701 MPIRNIAVGSPQEATHPDTLKAALAEFISTFIFVFAGSGSGIAYNKLTSDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGLFVGGNITFLRGIVYIIAQLLGSIVASLLLLFVTGMQSVPAFGLSAGVGVGNALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILLGGAFDGASMNPAVSFGPAVVSWSWANHWIYWVGPLVGGAIAGLIYEFVFINQSHEQLPTTDY. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04701 251 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04701 251 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04701 251 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04701 251 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04701 251 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04701 251 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04701 251 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04701 251 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Seca2g04701 251 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04701 251 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Seca2g04701 251 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04701 251 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Seca2g04701 251 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
Seca2g04701 251 FunFam Probable aquaporin TIP1-1 4 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04701 Seca-Chr2 133163096 133164731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04701 1 251 Major Intrinsic Protein MIP AT2G36830 80.876 3.01e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04701 K09873 - gmx:100527509 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04701 2 133163096 133164731 Seca2g04626 2 132285344 132287489 ECH
Seca2g04701 2 133163096 133164731 Seca8g07097 8 167060162 167063319 ECH
Seca2g04701 2 133163096 133164731 Seca2g04701 2 133163096 133164731 ECH
Seca2g04701 2 133163096 133164731 Seca4g04094 4 72792011 72793793 ECH
Seca8g05297 8 143571755 143573617 Seca2g04701 2 133163096 133164731 PCT